Strain Fitness in Variovorax sp. SCN45 around GFF2802

Experiment: Community=Kojac gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2801 and GFF2802 overlap by 4 nucleotidesGFF2802 and GFF2803 overlap by 4 nucleotides GFF2801 - Homoserine dehydrogenase (EC 1.1.1.3), at 230,256 to 231,605 GFF2801 GFF2802 - DUF1176 domain-containing protein, at 231,602 to 232,636 GFF2802 GFF2803 - Alanine transaminase (EC 2.6.1.2), at 232,633 to 233,865 GFF2803 Position (kb) 231 232 233Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 230.689 kb on + strand, within GFF2801at 230.690 kb on - strand, within GFF2801at 230.692 kb on + strand, within GFF2801at 230.693 kb on - strand, within GFF2801at 230.693 kb on - strand, within GFF2801at 230.693 kb on - strand, within GFF2801at 230.693 kb on - strand, within GFF2801at 230.693 kb on - strand, within GFF2801at 231.332 kb on - strand, within GFF2801at 231.561 kb on + strandat 231.561 kb on + strandat 231.561 kb on + strandat 231.561 kb on + strandat 231.561 kb on + strandat 231.562 kb on - strandat 231.562 kb on - strandat 231.654 kb on + strandat 231.655 kb on - strandat 231.655 kb on - strandat 231.856 kb on - strand, within GFF2802at 231.856 kb on - strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.894 kb on + strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.895 kb on - strand, within GFF2802at 231.900 kb on + strand, within GFF2802at 231.900 kb on + strand, within GFF2802at 231.900 kb on + strand, within GFF2802at 231.900 kb on + strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 231.901 kb on - strand, within GFF2802at 232.459 kb on + strand, within GFF2802at 232.459 kb on + strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.460 kb on - strand, within GFF2802at 232.838 kb on + strand, within GFF2803at 232.868 kb on + strand, within GFF2803at 232.868 kb on + strand, within GFF2803at 232.868 kb on + strand, within GFF2803at 232.868 kb on + strand, within GFF2803at 232.868 kb on + strand, within GFF2803at 232.868 kb on + strand, within GFF2803at 232.868 kb on + strand, within GFF2803at 232.869 kb on - strand, within GFF2803at 232.869 kb on - strand, within GFF2803at 232.869 kb on - strand, within GFF2803at 232.869 kb on - strand, within GFF2803at 232.926 kb on - strand, within GFF2803at 233.075 kb on + strand, within GFF2803at 233.075 kb on + strand, within GFF2803at 233.075 kb on + strand, within GFF2803at 233.075 kb on + strand, within GFF2803at 233.075 kb on + strand, within GFF2803at 233.076 kb on - strand, within GFF2803at 233.076 kb on - strand, within GFF2803at 233.142 kb on - strand, within GFF2803at 233.142 kb on - strand, within GFF2803at 233.142 kb on - strand, within GFF2803at 233.222 kb on + strand, within GFF2803at 233.223 kb on - strand, within GFF2803at 233.237 kb on + strand, within GFF2803at 233.237 kb on + strand, within GFF2803at 233.313 kb on - strand, within GFF2803at 233.313 kb on - strand, within GFF2803at 233.430 kb on - strand, within GFF2803at 233.430 kb on - strand, within GFF2803at 233.430 kb on - strand, within GFF2803at 233.571 kb on - strand, within GFF2803at 233.571 kb on - strand, within GFF2803at 233.571 kb on - strand, within GFF2803at 233.571 kb on - strand, within GFF2803at 233.571 kb on - strand, within GFF2803at 233.571 kb on - strand, within GFF2803

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
remove
230,689 + GFF2801 0.32 +2.0
230,690 - GFF2801 0.32 -0.3
230,692 + GFF2801 0.32 +0.0
230,693 - GFF2801 0.32 -1.7
230,693 - GFF2801 0.32 -1.0
230,693 - GFF2801 0.32 +0.0
230,693 - GFF2801 0.32 -1.0
230,693 - GFF2801 0.32 -1.3
231,332 - GFF2801 0.80 -0.6
231,561 + -2.1
231,561 + -2.1
231,561 + -1.0
231,561 + -2.1
231,561 + -2.1
231,562 - -2.4
231,562 - -0.2
231,654 + +0.4
231,655 - -0.8
231,655 - -1.0
231,856 - GFF2802 0.25 +0.4
231,856 - GFF2802 0.25 +0.6
231,894 + GFF2802 0.28 +1.0
231,894 + GFF2802 0.28 -0.3
231,894 + GFF2802 0.28 +1.0
231,894 + GFF2802 0.28 +0.4
231,894 + GFF2802 0.28 -1.3
231,894 + GFF2802 0.28 +1.9
231,894 + GFF2802 0.28 +0.0
231,894 + GFF2802 0.28 +1.8
231,894 + GFF2802 0.28 -2.9
231,895 - GFF2802 0.28 -1.6
231,895 - GFF2802 0.28 +0.4
231,895 - GFF2802 0.28 -2.7
231,895 - GFF2802 0.28 -2.2
231,895 - GFF2802 0.28 +0.5
231,895 - GFF2802 0.28 -1.0
231,895 - GFF2802 0.28 -0.3
231,895 - GFF2802 0.28 -1.4
231,895 - GFF2802 0.28 -2.9
231,895 - GFF2802 0.28 +1.9
231,895 - GFF2802 0.28 -3.6
231,900 + GFF2802 0.29 -1.0
231,900 + GFF2802 0.29 -1.1
231,900 + GFF2802 0.29 +1.0
231,900 + GFF2802 0.29 +0.4
231,901 - GFF2802 0.29 -3.5
231,901 - GFF2802 0.29 -2.7
231,901 - GFF2802 0.29 +0.3
231,901 - GFF2802 0.29 -1.6
231,901 - GFF2802 0.29 +0.9
231,901 - GFF2802 0.29 -3.2
231,901 - GFF2802 0.29 -0.1
231,901 - GFF2802 0.29 -2.4
231,901 - GFF2802 0.29 -1.3
232,459 + GFF2802 0.83 +0.4
232,459 + GFF2802 0.83 +0.0
232,460 - GFF2802 0.83 -1.1
232,460 - GFF2802 0.83 -0.9
232,460 - GFF2802 0.83 -2.1
232,460 - GFF2802 0.83 +0.7
232,460 - GFF2802 0.83 -1.7
232,460 - GFF2802 0.83 -0.5
232,460 - GFF2802 0.83 -0.8
232,838 + GFF2803 0.17 -0.6
232,868 + GFF2803 0.19 +0.0
232,868 + GFF2803 0.19 -2.1
232,868 + GFF2803 0.19 +0.5
232,868 + GFF2803 0.19 -1.6
232,868 + GFF2803 0.19 +4.0
232,868 + GFF2803 0.19 -0.8
232,868 + GFF2803 0.19 -1.1
232,869 - GFF2803 0.19 +0.7
232,869 - GFF2803 0.19 -1.1
232,869 - GFF2803 0.19 -1.4
232,869 - GFF2803 0.19 -0.3
232,926 - GFF2803 0.24 -2.1
233,075 + GFF2803 0.36 +0.8
233,075 + GFF2803 0.36 -0.8
233,075 + GFF2803 0.36 -1.3
233,075 + GFF2803 0.36 +0.2
233,075 + GFF2803 0.36 -0.8
233,076 - GFF2803 0.36 -0.6
233,076 - GFF2803 0.36 -2.1
233,142 - GFF2803 0.41 +0.4
233,142 - GFF2803 0.41 +0.0
233,142 - GFF2803 0.41 -1.7
233,222 + GFF2803 0.48 +1.8
233,223 - GFF2803 0.48 -0.3
233,237 + GFF2803 0.49 +0.4
233,237 + GFF2803 0.49 +0.4
233,313 - GFF2803 0.55 +2.4
233,313 - GFF2803 0.55 -1.3
233,430 - GFF2803 0.65 -0.6
233,430 - GFF2803 0.65 +0.0
233,430 - GFF2803 0.65 -0.3
233,571 - GFF2803 0.76 -1.7
233,571 - GFF2803 0.76 -1.8
233,571 - GFF2803 0.76 -0.9
233,571 - GFF2803 0.76 +1.0
233,571 - GFF2803 0.76 -1.3
233,571 - GFF2803 0.76 -0.6

Or see this region's nucleotide sequence