Strain Fitness in Variovorax sp. SCN45 around GFF2782

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2780 and GFF2781 are separated by 97 nucleotidesGFF2781 and GFF2782 overlap by 4 nucleotidesGFF2782 and GFF2783 overlap by 4 nucleotides GFF2780 - Phosphoesterase, PA-phosphatase related, at 210,699 to 211,433 GFF2780 GFF2781 - Phosphopantetheine-binding, at 211,531 to 211,773 GFF2781 GFF2782 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 211,770 to 212,978 GFF2782 GFF2783 - Transcriptional regulator, LysR family, at 212,975 to 213,862 GFF2783 Position (kb) 211 212 213Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 210.841 kb on - strand, within GFF2780at 210.925 kb on - strand, within GFF2780at 210.939 kb on + strand, within GFF2780at 210.940 kb on - strand, within GFF2780at 210.940 kb on - strand, within GFF2780at 210.940 kb on - strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.957 kb on + strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 210.958 kb on - strand, within GFF2780at 211.008 kb on + strand, within GFF2780at 211.009 kb on - strand, within GFF2780at 211.009 kb on - strand, within GFF2780at 211.009 kb on - strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.056 kb on + strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.057 kb on - strand, within GFF2780at 211.275 kb on + strand, within GFF2780at 211.276 kb on - strand, within GFF2780at 211.276 kb on - strand, within GFF2780at 211.276 kb on - strand, within GFF2780at 211.362 kb on + strandat 211.362 kb on + strandat 211.363 kb on - strandat 211.363 kb on - strandat 211.363 kb on - strandat 211.363 kb on - strandat 211.415 kb on + strandat 211.416 kb on - strandat 211.573 kb on + strand, within GFF2781at 211.573 kb on + strand, within GFF2781at 211.574 kb on - strand, within GFF2781at 212.005 kb on + strand, within GFF2782at 212.005 kb on + strand, within GFF2782at 212.006 kb on - strand, within GFF2782at 212.006 kb on - strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.217 kb on + strand, within GFF2782at 212.218 kb on - strand, within GFF2782at 212.218 kb on - strand, within GFF2782at 212.218 kb on - strand, within GFF2782at 212.218 kb on - strand, within GFF2782at 212.505 kb on + strand, within GFF2782at 212.505 kb on + strand, within GFF2782at 212.506 kb on - strand, within GFF2782at 212.506 kb on - strand, within GFF2782at 212.506 kb on - strand, within GFF2782at 212.506 kb on - strand, within GFF2782at 212.634 kb on + strand, within GFF2782at 212.634 kb on + strand, within GFF2782at 212.634 kb on + strand, within GFF2782at 212.634 kb on + strand, within GFF2782at 212.634 kb on + strand, within GFF2782at 212.635 kb on - strand, within GFF2782at 212.635 kb on - strand, within GFF2782at 212.635 kb on - strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.795 kb on + strand, within GFF2782at 212.796 kb on - strand, within GFF2782at 212.796 kb on - strand, within GFF2782at 212.796 kb on - strand, within GFF2782at 212.796 kb on - strand, within GFF2782at 212.796 kb on - strand, within GFF2782at 212.796 kb on - strand, within GFF2782at 212.796 kb on - strand, within GFF2782at 212.976 kb on + strandat 212.976 kb on + strandat 212.977 kb on - strandat 212.977 kb on - strandat 212.977 kb on - strandat 213.057 kb on + strandat 213.057 kb on + strandat 213.057 kb on + strandat 213.057 kb on + strandat 213.057 kb on + strandat 213.058 kb on - strandat 213.058 kb on - strandat 213.132 kb on + strand, within GFF2783at 213.132 kb on + strand, within GFF2783at 213.132 kb on + strand, within GFF2783at 213.132 kb on + strand, within GFF2783at 213.133 kb on - strand, within GFF2783at 213.133 kb on - strand, within GFF2783at 213.133 kb on - strand, within GFF2783at 213.133 kb on - strand, within GFF2783at 213.421 kb on - strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.456 kb on + strand, within GFF2783at 213.457 kb on - strand, within GFF2783at 213.457 kb on - strand, within GFF2783at 213.457 kb on - strand, within GFF2783at 213.457 kb on - strand, within GFF2783at 213.457 kb on - strand, within GFF2783at 213.899 kb on + strandat 213.899 kb on + strandat 213.899 kb on + strandat 213.899 kb on + strandat 213.900 kb on - strandat 213.917 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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210,841 - GFF2780 0.19 -0.1
210,925 - GFF2780 0.31 -2.3
210,939 + GFF2780 0.33 -3.2
210,940 - GFF2780 0.33 -0.9
210,940 - GFF2780 0.33 +0.3
210,940 - GFF2780 0.33 +0.4
210,957 + GFF2780 0.35 -0.6
210,957 + GFF2780 0.35 -2.6
210,957 + GFF2780 0.35 +1.4
210,957 + GFF2780 0.35 -2.7
210,957 + GFF2780 0.35 -2.2
210,957 + GFF2780 0.35 -1.3
210,957 + GFF2780 0.35 -0.7
210,957 + GFF2780 0.35 +0.1
210,957 + GFF2780 0.35 -1.3
210,957 + GFF2780 0.35 -1.2
210,957 + GFF2780 0.35 -1.2
210,957 + GFF2780 0.35 +0.1
210,957 + GFF2780 0.35 -0.8
210,957 + GFF2780 0.35 -1.6
210,957 + GFF2780 0.35 +0.0
210,958 - GFF2780 0.35 -0.3
210,958 - GFF2780 0.35 +0.4
210,958 - GFF2780 0.35 -2.8
210,958 - GFF2780 0.35 -1.3
210,958 - GFF2780 0.35 -0.4
210,958 - GFF2780 0.35 -1.0
210,958 - GFF2780 0.35 -1.0
210,958 - GFF2780 0.35 -0.3
210,958 - GFF2780 0.35 -2.2
210,958 - GFF2780 0.35 +3.0
211,008 + GFF2780 0.42 -1.9
211,009 - GFF2780 0.42 +1.1
211,009 - GFF2780 0.42 -3.1
211,009 - GFF2780 0.42 +2.0
211,056 + GFF2780 0.49 -1.0
211,056 + GFF2780 0.49 +0.0
211,056 + GFF2780 0.49 +0.7
211,056 + GFF2780 0.49 -0.8
211,056 + GFF2780 0.49 -1.9
211,056 + GFF2780 0.49 -0.6
211,056 + GFF2780 0.49 -1.5
211,057 - GFF2780 0.49 +1.2
211,057 - GFF2780 0.49 +1.4
211,057 - GFF2780 0.49 -1.2
211,057 - GFF2780 0.49 -0.9
211,057 - GFF2780 0.49 -0.8
211,057 - GFF2780 0.49 +0.8
211,275 + GFF2780 0.78 -0.8
211,276 - GFF2780 0.79 -1.8
211,276 - GFF2780 0.79 -1.5
211,276 - GFF2780 0.79 -2.3
211,362 + -1.0
211,362 + -0.3
211,363 - +1.0
211,363 - -0.5
211,363 - -0.4
211,363 - -1.9
211,415 + +0.6
211,416 - -1.3
211,573 + GFF2781 0.17 +0.0
211,573 + GFF2781 0.17 -3.8
211,574 - GFF2781 0.18 +0.0
212,005 + GFF2782 0.19 +0.3
212,005 + GFF2782 0.19 +1.1
212,006 - GFF2782 0.20 -1.1
212,006 - GFF2782 0.20 +0.0
212,217 + GFF2782 0.37 -0.8
212,217 + GFF2782 0.37 +0.4
212,217 + GFF2782 0.37 +0.4
212,217 + GFF2782 0.37 +0.6
212,217 + GFF2782 0.37 +0.3
212,217 + GFF2782 0.37 -2.2
212,218 - GFF2782 0.37 +0.4
212,218 - GFF2782 0.37 -1.0
212,218 - GFF2782 0.37 -0.4
212,218 - GFF2782 0.37 -0.9
212,505 + GFF2782 0.61 -0.9
212,505 + GFF2782 0.61 -1.2
212,506 - GFF2782 0.61 +0.5
212,506 - GFF2782 0.61 -1.1
212,506 - GFF2782 0.61 -2.7
212,506 - GFF2782 0.61 +1.0
212,634 + GFF2782 0.71 +0.4
212,634 + GFF2782 0.71 +0.6
212,634 + GFF2782 0.71 -3.5
212,634 + GFF2782 0.71 +1.0
212,634 + GFF2782 0.71 -0.6
212,635 - GFF2782 0.72 +0.2
212,635 - GFF2782 0.72 +0.4
212,635 - GFF2782 0.72 +1.0
212,795 + GFF2782 0.85 +3.2
212,795 + GFF2782 0.85 -1.8
212,795 + GFF2782 0.85 -1.5
212,795 + GFF2782 0.85 -2.6
212,795 + GFF2782 0.85 -0.7
212,795 + GFF2782 0.85 -2.4
212,795 + GFF2782 0.85 +0.8
212,795 + GFF2782 0.85 +0.9
212,795 + GFF2782 0.85 +1.6
212,795 + GFF2782 0.85 -1.6
212,796 - GFF2782 0.85 +1.4
212,796 - GFF2782 0.85 +1.7
212,796 - GFF2782 0.85 +1.0
212,796 - GFF2782 0.85 +0.3
212,796 - GFF2782 0.85 +1.5
212,796 - GFF2782 0.85 +0.6
212,796 - GFF2782 0.85 -0.3
212,976 + +1.6
212,976 + -0.3
212,977 - +2.1
212,977 - -2.1
212,977 - +1.2
213,057 + +0.9
213,057 + +1.1
213,057 + -2.1
213,057 + +1.0
213,057 + +0.1
213,058 - -3.0
213,058 - -1.1
213,132 + GFF2783 0.18 -0.9
213,132 + GFF2783 0.18 -3.3
213,132 + GFF2783 0.18 +1.5
213,132 + GFF2783 0.18 +0.9
213,133 - GFF2783 0.18 +1.3
213,133 - GFF2783 0.18 -0.6
213,133 - GFF2783 0.18 -1.3
213,133 - GFF2783 0.18 -0.8
213,421 - GFF2783 0.50 -0.1
213,456 + GFF2783 0.54 -2.1
213,456 + GFF2783 0.54 +1.5
213,456 + GFF2783 0.54 -0.5
213,456 + GFF2783 0.54 +0.5
213,456 + GFF2783 0.54 -2.6
213,456 + GFF2783 0.54 +0.1
213,456 + GFF2783 0.54 -1.2
213,456 + GFF2783 0.54 -1.0
213,456 + GFF2783 0.54 -2.2
213,456 + GFF2783 0.54 -1.3
213,457 - GFF2783 0.54 -2.0
213,457 - GFF2783 0.54 -0.5
213,457 - GFF2783 0.54 +0.5
213,457 - GFF2783 0.54 -1.2
213,457 - GFF2783 0.54 +0.8
213,899 + -0.8
213,899 + -0.2
213,899 + -0.5
213,899 + +0.9
213,900 - -1.4
213,917 + -1.0

Or see this region's nucleotide sequence