Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2763 and GFF2764 are separated by 37 nucleotides GFF2764 and GFF2765 are separated by 37 nucleotides GFF2765 and GFF2766 overlap by 4 nucleotides
GFF2763 - 33 kDa chaperonin HslO, at 194,462 to 195,460
GFF2763
GFF2764 - Carbonic anhydrase-like protein MJ0304, at 195,498 to 196,022
GFF2764
GFF2765 - FIG00005326: uncharacterized protein, at 196,060 to 196,872
GFF2765
GFF2766 - Pentapeptide repeat family protein, at 196,869 to 197,555
GFF2766
Position (kb) 195
196
197 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 194.542 kb on - strand at 194.808 kb on + strand, within GFF2763 at 194.808 kb on + strand, within GFF2763 at 194.808 kb on + strand, within GFF2763 at 194.808 kb on + strand, within GFF2763 at 194.808 kb on + strand, within GFF2763 at 194.808 kb on + strand, within GFF2763 at 194.808 kb on + strand, within GFF2763 at 194.808 kb on + strand, within GFF2763 at 194.808 kb on + strand, within GFF2763 at 194.808 kb on + strand, within GFF2763 at 194.808 kb on + strand, within GFF2763 at 194.808 kb on + strand, within GFF2763 at 194.809 kb on - strand, within GFF2763 at 194.809 kb on - strand, within GFF2763 at 194.809 kb on - strand, within GFF2763 at 194.809 kb on - strand, within GFF2763 at 194.809 kb on - strand, within GFF2763 at 194.809 kb on - strand, within GFF2763 at 194.809 kb on - strand, within GFF2763 at 194.982 kb on + strand, within GFF2763 at 194.982 kb on + strand, within GFF2763 at 194.982 kb on + strand, within GFF2763 at 194.982 kb on + strand, within GFF2763 at 194.982 kb on + strand, within GFF2763 at 194.982 kb on + strand, within GFF2763 at 194.982 kb on + strand, within GFF2763 at 194.982 kb on + strand, within GFF2763 at 194.982 kb on + strand, within GFF2763 at 194.982 kb on + strand, within GFF2763 at 194.982 kb on + strand, within GFF2763 at 194.982 kb on + strand, within GFF2763 at 194.982 kb on + strand, within GFF2763 at 194.982 kb on + strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 194.983 kb on - strand, within GFF2763 at 195.055 kb on - strand, within GFF2763 at 195.055 kb on - strand, within GFF2763 at 195.242 kb on + strand, within GFF2763 at 195.242 kb on + strand, within GFF2763 at 195.242 kb on + strand, within GFF2763 at 195.242 kb on + strand, within GFF2763 at 195.339 kb on + strand, within GFF2763 at 195.356 kb on - strand, within GFF2763 at 195.547 kb on + strand at 195.547 kb on + strand at 195.547 kb on + strand at 195.547 kb on + strand at 195.547 kb on + strand at 195.547 kb on + strand at 195.547 kb on + strand at 195.547 kb on + strand at 195.547 kb on + strand at 195.547 kb on + strand at 195.547 kb on + strand at 195.547 kb on + strand at 195.547 kb on + strand at 195.547 kb on + strand at 195.547 kb on + strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.548 kb on - strand at 195.708 kb on - strand, within GFF2764 at 195.708 kb on - strand, within GFF2764 at 195.708 kb on - strand, within GFF2764 at 195.912 kb on + strand, within GFF2764 at 195.912 kb on + strand, within GFF2764 at 195.912 kb on + strand, within GFF2764 at 195.913 kb on - strand, within GFF2764 at 195.913 kb on - strand, within GFF2764 at 195.913 kb on - strand, within GFF2764 at 195.913 kb on - strand, within GFF2764 at 195.913 kb on - strand, within GFF2764 at 195.913 kb on - strand, within GFF2764 at 196.012 kb on + strand at 196.012 kb on + strand at 196.012 kb on + strand at 196.013 kb on - strand at 196.013 kb on - strand at 196.047 kb on + strand at 196.055 kb on + strand at 196.055 kb on + strand at 196.055 kb on + strand at 196.055 kb on + strand at 196.055 kb on + strand at 196.055 kb on + strand at 196.055 kb on + strand at 196.055 kb on + strand at 196.056 kb on - strand at 196.056 kb on - strand at 196.056 kb on - strand at 196.056 kb on - strand at 196.056 kb on - strand at 196.056 kb on - strand at 196.378 kb on + strand, within GFF2765 at 196.378 kb on + strand, within GFF2765 at 196.378 kb on + strand, within GFF2765 at 196.378 kb on + strand, within GFF2765 at 196.378 kb on + strand, within GFF2765 at 196.379 kb on - strand, within GFF2765 at 196.379 kb on - strand, within GFF2765 at 196.379 kb on - strand, within GFF2765 at 196.382 kb on - strand, within GFF2765 at 196.382 kb on - strand, within GFF2765 at 196.459 kb on + strand, within GFF2765 at 196.466 kb on - strand, within GFF2765 at 196.702 kb on + strand, within GFF2765 at 196.703 kb on - strand, within GFF2765 at 196.703 kb on - strand, within GFF2765 at 196.747 kb on + strand, within GFF2765 at 196.748 kb on - strand, within GFF2765 at 196.768 kb on + strand, within GFF2765
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 194,542 - +0.0 194,808 + GFF2763 0.35 -2.1 194,808 + GFF2763 0.35 -0.4 194,808 + GFF2763 0.35 -0.6 194,808 + GFF2763 0.35 -1.3 194,808 + GFF2763 0.35 -0.8 194,808 + GFF2763 0.35 -1.8 194,808 + GFF2763 0.35 -2.4 194,808 + GFF2763 0.35 +0.9 194,808 + GFF2763 0.35 -2.6 194,808 + GFF2763 0.35 +0.6 194,808 + GFF2763 0.35 -0.9 194,808 + GFF2763 0.35 -1.5 194,809 - GFF2763 0.35 -1.5 194,809 - GFF2763 0.35 -2.6 194,809 - GFF2763 0.35 -1.2 194,809 - GFF2763 0.35 +0.0 194,809 - GFF2763 0.35 -1.5 194,809 - GFF2763 0.35 -1.6 194,809 - GFF2763 0.35 -0.6 194,982 + GFF2763 0.52 -1.9 194,982 + GFF2763 0.52 -2.8 194,982 + GFF2763 0.52 +0.3 194,982 + GFF2763 0.52 +0.4 194,982 + GFF2763 0.52 -1.2 194,982 + GFF2763 0.52 -1.5 194,982 + GFF2763 0.52 -0.1 194,982 + GFF2763 0.52 +0.4 194,982 + GFF2763 0.52 -0.8 194,982 + GFF2763 0.52 +1.3 194,982 + GFF2763 0.52 +1.4 194,982 + GFF2763 0.52 +1.6 194,982 + GFF2763 0.52 -2.4 194,982 + GFF2763 0.52 -0.3 194,983 - GFF2763 0.52 -1.1 194,983 - GFF2763 0.52 +0.6 194,983 - GFF2763 0.52 -1.8 194,983 - GFF2763 0.52 +0.4 194,983 - GFF2763 0.52 +0.9 194,983 - GFF2763 0.52 +0.1 194,983 - GFF2763 0.52 -0.3 194,983 - GFF2763 0.52 -1.2 194,983 - GFF2763 0.52 -2.0 194,983 - GFF2763 0.52 -0.6 194,983 - GFF2763 0.52 -1.3 194,983 - GFF2763 0.52 -3.5 194,983 - GFF2763 0.52 -1.7 194,983 - GFF2763 0.52 -3.9 194,983 - GFF2763 0.52 +2.6 194,983 - GFF2763 0.52 +0.5 194,983 - GFF2763 0.52 -1.5 194,983 - GFF2763 0.52 +0.3 194,983 - GFF2763 0.52 +0.4 195,055 - GFF2763 0.59 -1.3 195,055 - GFF2763 0.59 +0.0 195,242 + GFF2763 0.78 -0.3 195,242 + GFF2763 0.78 +0.6 195,242 + GFF2763 0.78 +0.8 195,242 + GFF2763 0.78 -0.3 195,339 + GFF2763 0.88 -0.7 195,356 - GFF2763 0.89 -3.6 195,547 + -1.6 195,547 + -0.3 195,547 + +0.2 195,547 + +1.4 195,547 + -0.1 195,547 + -1.8 195,547 + -3.2 195,547 + -1.6 195,547 + +1.5 195,547 + +1.2 195,547 + +0.8 195,547 + -0.3 195,547 + -2.1 195,547 + -0.3 195,547 + +0.7 195,548 - +0.0 195,548 - +1.2 195,548 - +0.0 195,548 - +0.0 195,548 - -0.8 195,548 - -2.9 195,548 - +1.0 195,548 - +0.5 195,548 - +1.6 195,548 - -0.3 195,548 - +0.4 195,548 - +0.0 195,548 - +1.7 195,548 - +1.3 195,548 - +1.0 195,548 - +0.2 195,548 - +0.5 195,708 - GFF2764 0.40 +0.8 195,708 - GFF2764 0.40 -1.7 195,708 - GFF2764 0.40 +0.6 195,912 + GFF2764 0.79 -0.7 195,912 + GFF2764 0.79 +1.0 195,912 + GFF2764 0.79 -1.0 195,913 - GFF2764 0.79 -1.5 195,913 - GFF2764 0.79 +0.0 195,913 - GFF2764 0.79 +0.3 195,913 - GFF2764 0.79 -0.6 195,913 - GFF2764 0.79 -2.1 195,913 - GFF2764 0.79 -1.9 196,012 + -0.3 196,012 + -1.2 196,012 + -1.2 196,013 - -3.7 196,013 - -0.1 196,047 + -2.5 196,055 + -1.8 196,055 + -0.9 196,055 + -1.9 196,055 + +0.0 196,055 + -1.0 196,055 + -1.2 196,055 + -0.3 196,055 + +1.6 196,056 - -2.2 196,056 - -0.6 196,056 - -0.0 196,056 - -0.5 196,056 - -0.3 196,056 - +0.1 196,378 + GFF2765 0.39 -2.7 196,378 + GFF2765 0.39 -1.8 196,378 + GFF2765 0.39 -0.7 196,378 + GFF2765 0.39 -0.2 196,378 + GFF2765 0.39 +0.0 196,379 - GFF2765 0.39 -0.4 196,379 - GFF2765 0.39 +0.0 196,379 - GFF2765 0.39 -1.7 196,382 - GFF2765 0.40 -0.7 196,382 - GFF2765 0.40 +0.4 196,459 + GFF2765 0.49 +1.1 196,466 - GFF2765 0.50 -1.2 196,702 + GFF2765 0.79 -1.0 196,703 - GFF2765 0.79 +1.3 196,703 - GFF2765 0.79 -1.2 196,747 + GFF2765 0.85 -0.1 196,748 - GFF2765 0.85 +1.5 196,768 + GFF2765 0.87 -1.8
Or see this region's nucleotide sequence