Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2689 and GFF2690 overlap by 4 nucleotides GFF2690 and GFF2691 are separated by 89 nucleotides GFF2691 and GFF2692 overlap by 4 nucleotides GFF2692 and GFF2693 overlap by 29 nucleotides
GFF2689 - Protein containing transglutaminase-like domain, putative cysteine protease, at 118,759 to 119,715
GFF2689
GFF2690 - RidA/YER057c/UK114 superfamily, group 1, at 119,712 to 120,170
GFF2690
GFF2691 - no description, at 120,260 to 120,934
GFF2691
GFF2692 - hypothetical protein, at 120,931 to 121,506
GFF2692
GFF2693 - no description, at 121,478 to 122,485
GFF2693
Position (kb) 120
121 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 119.272 kb on - strand, within GFF2689 at 119.371 kb on + strand, within GFF2689 at 119.536 kb on + strand, within GFF2689 at 119.537 kb on - strand, within GFF2689 at 119.537 kb on - strand, within GFF2689 at 119.537 kb on - strand, within GFF2689 at 119.564 kb on - strand, within GFF2689 at 119.591 kb on + strand, within GFF2689 at 119.592 kb on - strand, within GFF2689 at 119.782 kb on - strand, within GFF2690 at 119.851 kb on + strand, within GFF2690 at 120.217 kb on + strand at 120.217 kb on + strand at 120.218 kb on - strand at 120.360 kb on + strand, within GFF2691 at 120.361 kb on - strand, within GFF2691 at 120.361 kb on - strand, within GFF2691 at 120.749 kb on + strand, within GFF2691 at 120.749 kb on + strand, within GFF2691 at 120.750 kb on - strand, within GFF2691 at 120.782 kb on + strand, within GFF2691 at 120.867 kb on - strand at 120.875 kb on + strand at 120.875 kb on + strand at 120.876 kb on - strand at 121.115 kb on - strand, within GFF2692 at 121.237 kb on + strand, within GFF2692 at 121.301 kb on - strand, within GFF2692 at 121.351 kb on + strand, within GFF2692 at 121.636 kb on - strand, within GFF2693 at 121.636 kb on - strand, within GFF2693 at 121.665 kb on + strand, within GFF2693 at 121.665 kb on + strand, within GFF2693 at 121.734 kb on + strand, within GFF2693 at 121.734 kb on + strand, within GFF2693 at 121.734 kb on + strand, within GFF2693 at 121.735 kb on - strand, within GFF2693 at 121.735 kb on - strand, within GFF2693 at 121.896 kb on + strand, within GFF2693 at 121.897 kb on - strand, within GFF2693
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 119,272 - GFF2689 0.54 -1.8 119,371 + GFF2689 0.64 +1.0 119,536 + GFF2689 0.81 -1.0 119,537 - GFF2689 0.81 +0.9 119,537 - GFF2689 0.81 -2.0 119,537 - GFF2689 0.81 -2.5 119,564 - GFF2689 0.84 -0.6 119,591 + GFF2689 0.87 +2.0 119,592 - GFF2689 0.87 +0.5 119,782 - GFF2690 0.15 -0.8 119,851 + GFF2690 0.30 -0.0 120,217 + -0.8 120,217 + -0.6 120,218 - +2.0 120,360 + GFF2691 0.15 +0.2 120,361 - GFF2691 0.15 -0.0 120,361 - GFF2691 0.15 +0.2 120,749 + GFF2691 0.72 +0.9 120,749 + GFF2691 0.72 -0.0 120,750 - GFF2691 0.73 +0.1 120,782 + GFF2691 0.77 -1.6 120,867 - +0.8 120,875 + +0.4 120,875 + -1.6 120,876 - -1.9 121,115 - GFF2692 0.32 +1.6 121,237 + GFF2692 0.53 +2.2 121,301 - GFF2692 0.64 -1.2 121,351 + GFF2692 0.73 +0.3 121,636 - GFF2693 0.16 +2.3 121,636 - GFF2693 0.16 -3.7 121,665 + GFF2693 0.19 -1.1 121,665 + GFF2693 0.19 +1.3 121,734 + GFF2693 0.25 -0.1 121,734 + GFF2693 0.25 +0.6 121,734 + GFF2693 0.25 +1.4 121,735 - GFF2693 0.25 -1.0 121,735 - GFF2693 0.25 -0.8 121,896 + GFF2693 0.41 +1.5 121,897 - GFF2693 0.42 +0.1
Or see this region's nucleotide sequence