Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2608 and GFF2609 overlap by 8 nucleotides GFF2609 and GFF2610 overlap by 1 nucleotides GFF2610 and GFF2611 are separated by 33 nucleotides
GFF2608 - Transcriptional regulator FrcR for fructose utilization, ROK family, at 12,901 to 14,124
GFF2608
GFF2609 - Fructose ABC transporter, ATP-binding component FrcA, at 14,117 to 14,914
GFF2609
GFF2610 - Fructose ABC transporter, permease component FrcC, at 14,914 to 15,873
GFF2610
GFF2611 - Fructose ABC transporter, substrate-binding component FrcB, at 15,907 to 16,914
GFF2611
Position (kb) 14
15 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 13.233 kb on - strand, within GFF2608 at 13.428 kb on + strand, within GFF2608 at 13.428 kb on + strand, within GFF2608 at 13.437 kb on - strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.442 kb on + strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.443 kb on - strand, within GFF2608 at 13.748 kb on + strand, within GFF2608 at 13.749 kb on - strand, within GFF2608 at 14.118 kb on + strand at 14.118 kb on + strand at 14.118 kb on + strand at 14.118 kb on + strand at 14.607 kb on + strand, within GFF2609 at 14.607 kb on + strand, within GFF2609 at 14.607 kb on + strand, within GFF2609 at 14.643 kb on + strand, within GFF2609 at 14.644 kb on - strand, within GFF2609 at 14.644 kb on - strand, within GFF2609 at 14.856 kb on + strand at 14.857 kb on - strand at 14.991 kb on - strand at 14.991 kb on - strand at 14.991 kb on - strand at 15.200 kb on + strand, within GFF2610 at 15.200 kb on + strand, within GFF2610 at 15.200 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.221 kb on + strand, within GFF2610 at 15.222 kb on - strand, within GFF2610 at 15.222 kb on - strand, within GFF2610 at 15.222 kb on - strand, within GFF2610 at 15.293 kb on + strand, within GFF2610 at 15.293 kb on + strand, within GFF2610 at 15.293 kb on + strand, within GFF2610 at 15.293 kb on + strand, within GFF2610 at 15.293 kb on + strand, within GFF2610 at 15.293 kb on + strand, within GFF2610 at 15.293 kb on + strand, within GFF2610 at 15.294 kb on - strand, within GFF2610 at 15.344 kb on + strand, within GFF2610 at 15.344 kb on + strand, within GFF2610 at 15.344 kb on + strand, within GFF2610 at 15.345 kb on - strand, within GFF2610 at 15.345 kb on - strand, within GFF2610 at 15.458 kb on + strand, within GFF2610 at 15.458 kb on + strand, within GFF2610 at 15.458 kb on + strand, within GFF2610 at 15.459 kb on - strand, within GFF2610 at 15.459 kb on - strand, within GFF2610 at 15.797 kb on - strand at 15.908 kb on + strand at 15.908 kb on + strand at 15.908 kb on + strand at 15.908 kb on + strand at 15.908 kb on + strand at 15.909 kb on - strand at 15.909 kb on - strand at 15.909 kb on - strand at 15.909 kb on - strand at 15.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 13,233 - GFF2608 0.27 -1.2 13,428 + GFF2608 0.43 -0.7 13,428 + GFF2608 0.43 -0.8 13,437 - GFF2608 0.44 +2.0 13,442 + GFF2608 0.44 -2.3 13,442 + GFF2608 0.44 -3.5 13,442 + GFF2608 0.44 -0.3 13,442 + GFF2608 0.44 -0.5 13,442 + GFF2608 0.44 +0.6 13,442 + GFF2608 0.44 -2.5 13,442 + GFF2608 0.44 -1.2 13,442 + GFF2608 0.44 -2.2 13,442 + GFF2608 0.44 +0.9 13,442 + GFF2608 0.44 -0.5 13,443 - GFF2608 0.44 -0.6 13,443 - GFF2608 0.44 -1.3 13,443 - GFF2608 0.44 -2.1 13,443 - GFF2608 0.44 -4.1 13,443 - GFF2608 0.44 -0.0 13,443 - GFF2608 0.44 -2.8 13,443 - GFF2608 0.44 -3.9 13,748 + GFF2608 0.69 -1.8 13,749 - GFF2608 0.69 -1.6 14,118 + +0.3 14,118 + -0.1 14,118 + +1.0 14,118 + -3.1 14,607 + GFF2609 0.61 +4.0 14,607 + GFF2609 0.61 -1.5 14,607 + GFF2609 0.61 -0.1 14,643 + GFF2609 0.66 -1.0 14,644 - GFF2609 0.66 -1.5 14,644 - GFF2609 0.66 +0.1 14,856 + -1.6 14,857 - -2.3 14,991 - -0.2 14,991 - -0.4 14,991 - -1.1 15,200 + GFF2610 0.30 -1.0 15,200 + GFF2610 0.30 +0.4 15,200 + GFF2610 0.30 -1.6 15,221 + GFF2610 0.32 -0.3 15,221 + GFF2610 0.32 -3.3 15,221 + GFF2610 0.32 -1.7 15,221 + GFF2610 0.32 +0.9 15,221 + GFF2610 0.32 -2.6 15,221 + GFF2610 0.32 -0.2 15,221 + GFF2610 0.32 -0.0 15,221 + GFF2610 0.32 -2.2 15,221 + GFF2610 0.32 -2.0 15,222 - GFF2610 0.32 -0.3 15,222 - GFF2610 0.32 -1.9 15,222 - GFF2610 0.32 -1.5 15,293 + GFF2610 0.39 -0.6 15,293 + GFF2610 0.39 +0.2 15,293 + GFF2610 0.39 +0.2 15,293 + GFF2610 0.39 +1.7 15,293 + GFF2610 0.39 -1.3 15,293 + GFF2610 0.39 +0.2 15,293 + GFF2610 0.39 +2.0 15,294 - GFF2610 0.40 -2.7 15,344 + GFF2610 0.45 +0.2 15,344 + GFF2610 0.45 +0.9 15,344 + GFF2610 0.45 -1.8 15,345 - GFF2610 0.45 +2.9 15,345 - GFF2610 0.45 +0.8 15,458 + GFF2610 0.57 -0.3 15,458 + GFF2610 0.57 -1.8 15,458 + GFF2610 0.57 +2.4 15,459 - GFF2610 0.57 -2.3 15,459 - GFF2610 0.57 +3.1 15,797 - -0.3 15,908 + -0.6 15,908 + -2.1 15,908 + -0.9 15,908 + -0.6 15,908 + +1.4 15,909 - -1.9 15,909 - +2.6 15,909 - +1.1 15,909 - -0.8 15,909 - -0.5
Or see this region's nucleotide sequence