Strain Fitness in Variovorax sp. SCN45 around GFF2597

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
2,208	+		GFF2596	0.23	-0.2
2,208	+		GFF2596	0.23	-1.5
2,208	+		GFF2596	0.23	-1.2
2,208	+		GFF2596	0.23	-0.4
2,208	+		GFF2596	0.23	+1.3
2,208	+		GFF2596	0.23	-1.8
2,209	-		GFF2596	0.23	+1.0
2,209	-		GFF2596	0.23	+1.1
2,209	-		GFF2596	0.23	-3.4
2,209	-		GFF2596	0.23	-0.8
2,209	-		GFF2596	0.23	+2.2
2,209	-		GFF2596	0.23	+2.4
2,209	-		GFF2596	0.23	+0.8
2,332	-		GFF2596	0.33	-0.8
2,332	-		GFF2596	0.33	+1.2
2,373	+		GFF2596	0.36	-2.0
2,373	+		GFF2596	0.36	-0.3
2,373	+		GFF2596	0.36	+0.8
2,373	+		GFF2596	0.36	-0.7
2,373	+		GFF2596	0.36	-0.2
2,374	-		GFF2596	0.36	-0.1
2,374	-		GFF2596	0.36	-2.2
2,430	+		GFF2596	0.41	+1.2
2,439	+		GFF2596	0.42	-1.0
2,439	+		GFF2596	0.42	-1.8
2,439	+		GFF2596	0.42	-2.6
2,439	+		GFF2596	0.42	-0.8
2,440	-		GFF2596	0.42	-2.5
2,440	-		GFF2596	0.42	-3.7
2,440	-		GFF2596	0.42	+2.0
2,440	-		GFF2596	0.42	-1.4
2,440	-		GFF2596	0.42	-1.5
2,440	-		GFF2596	0.42	+1.2
2,440	-		GFF2596	0.42	-1.0
2,440	-		GFF2596	0.42	-0.5
2,481	+		GFF2596	0.45	-0.6
2,481	+		GFF2596	0.45	-1.3
2,482	-		GFF2596	0.45	+0.4
2,482	-		GFF2596	0.45	+0.7
2,604	+		GFF2596	0.55	+2.2
2,604	+		GFF2596	0.55	-2.9
2,605	-		GFF2596	0.55	-0.0
2,634	+		GFF2596	0.58	-1.7
2,634	+		GFF2596	0.58	+1.0
2,635	-		GFF2596	0.58	+0.3
2,635	-		GFF2596	0.58	-1.2
2,635	-		GFF2596	0.58	-2.8
2,635	-		GFF2596	0.58	-2.6
2,898	+		GFF2596	0.79	-0.2
2,898	+		GFF2596	0.79	-2.3
2,898	+		GFF2596	0.79	-0.3
2,898	+		GFF2596	0.79	+1.3
2,898	+		GFF2596	0.79	-2.2
2,898	+		GFF2596	0.79	-1.6
2,898	+		GFF2596	0.79	+0.7
2,899	-		GFF2596	0.79	-0.8
2,899	-		GFF2596	0.79	+3.7
2,899	-		GFF2596	0.79	-1.1
2,899	-		GFF2596	0.79	-1.7
2,899	-		GFF2596	0.79	-0.0
2,899	-		GFF2596	0.79	+1.4
2,899	-		GFF2596	0.79	+0.5
2,899	-		GFF2596	0.79	+0.7
2,899	-		GFF2596	0.79	-0.0
2,899	-		GFF2596	0.79	-0.0
2,899	-		GFF2596	0.79	+1.1
3,054	+				-0.6
3,054	+				-2.7
3,054	+				-1.0
3,054	+				+0.8
3,054	+				+0.4
3,055	-				+0.0
3,055	-				-2.4
3,055	-				-1.0
3,055	-				-2.8
3,055	-				-1.9
3,055	-				+2.5
3,055	-				-1.3
3,248	+		GFF2597	0.23	-3.5
3,248	+		GFF2597	0.23	-1.2
3,248	+		GFF2597	0.23	-0.6
3,249	-		GFF2597	0.23	+1.4
3,386	+		GFF2597	0.55	+0.7
3,386	+		GFF2597	0.55	-2.4
3,387	-		GFF2597	0.55	-0.2
3,387	-		GFF2597	0.55	+0.5
3,551	+				+2.0
3,551	+				+0.8
3,551	+				+0.4
3,551	+				-0.3
3,552	-				+0.4
3,552	-				-1.2
3,552	-				-0.7
4,022	-		GFF2598	0.36	-0.3
4,022	-		GFF2598	0.36	+0.9
4,022	-		GFF2598	0.36	-1.5
4,022	-		GFF2598	0.36	+0.8
4,022	-		GFF2598	0.36	-0.8
4,504	+		GFF2598	0.76	-1.9
4,504	+		GFF2598	0.76	-0.6
4,505	-		GFF2598	0.76	-0.4
4,505	-		GFF2598	0.76	+0.9
4,505	-		GFF2598	0.76	-0.8