Strain Fitness in Variovorax sp. SCN45 around GFF2556

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2554 and GFF2555 are separated by 4 nucleotidesGFF2555 and GFF2556 are separated by 127 nucleotidesGFF2556 and GFF2557 are separated by 73 nucleotidesGFF2557 and GFF2558 are separated by 97 nucleotides GFF2554 - Integral membrane protein, at 616,227 to 617,108 GFF2554 GFF2555 - FIG00932538: hypothetical protein, at 617,113 to 617,937 GFF2555 GFF2556 - UPF0337 family protein, at 618,065 to 618,262 GFF2556 GFF2557 - transport-associated, at 618,336 to 618,854 GFF2557 GFF2558 - DNA protection during starvation protein, at 618,952 to 619,512 GFF2558 Position (kb) 618 619Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 617.368 kb on + strand, within GFF2555at 617.368 kb on + strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.369 kb on - strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.515 kb on + strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.516 kb on - strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.614 kb on + strand, within GFF2555at 617.615 kb on - strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.656 kb on + strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.657 kb on - strand, within GFF2555at 617.950 kb on + strandat 617.950 kb on + strandat 617.950 kb on + strandat 617.950 kb on + strandat 617.950 kb on + strandat 617.951 kb on - strandat 617.951 kb on - strandat 617.951 kb on - strandat 617.951 kb on - strandat 618.020 kb on - strandat 618.020 kb on - strandat 618.032 kb on + strandat 618.032 kb on + strandat 618.032 kb on + strandat 618.032 kb on + strandat 618.033 kb on - strandat 618.033 kb on - strandat 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.203 kb on + strand, within GFF2556at 618.204 kb on - strand, within GFF2556at 618.204 kb on - strand, within GFF2556at 618.204 kb on - strand, within GFF2556at 618.204 kb on - strand, within GFF2556at 618.219 kb on - strand, within GFF2556at 618.500 kb on + strand, within GFF2557at 618.500 kb on + strand, within GFF2557at 618.708 kb on - strand, within GFF2557at 618.942 kb on + strandat 618.942 kb on + strandat 619.070 kb on + strand, within GFF2558at 619.071 kb on - strand, within GFF2558at 619.142 kb on + strand, within GFF2558at 619.142 kb on + strand, within GFF2558at 619.142 kb on + strand, within GFF2558

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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617,368 + GFF2555 0.31 -1.7
617,368 + GFF2555 0.31 -0.5
617,369 - GFF2555 0.31 +1.2
617,369 - GFF2555 0.31 -1.2
617,369 - GFF2555 0.31 +2.1
617,369 - GFF2555 0.31 -3.0
617,369 - GFF2555 0.31 +0.7
617,515 + GFF2555 0.49 +2.9
617,515 + GFF2555 0.49 -1.4
617,515 + GFF2555 0.49 -0.8
617,515 + GFF2555 0.49 +0.1
617,515 + GFF2555 0.49 -1.1
617,515 + GFF2555 0.49 +0.6
617,515 + GFF2555 0.49 +0.2
617,515 + GFF2555 0.49 -1.4
617,516 - GFF2555 0.49 +0.4
617,516 - GFF2555 0.49 -0.6
617,516 - GFF2555 0.49 +0.3
617,516 - GFF2555 0.49 +2.9
617,516 - GFF2555 0.49 -0.7
617,516 - GFF2555 0.49 -1.3
617,516 - GFF2555 0.49 -0.8
617,516 - GFF2555 0.49 +0.3
617,516 - GFF2555 0.49 -1.2
617,516 - GFF2555 0.49 -3.5
617,516 - GFF2555 0.49 -1.2
617,614 + GFF2555 0.61 -0.3
617,614 + GFF2555 0.61 +0.8
617,614 + GFF2555 0.61 -0.1
617,614 + GFF2555 0.61 +1.7
617,614 + GFF2555 0.61 -0.6
617,615 - GFF2555 0.61 -0.2
617,656 + GFF2555 0.66 +2.1
617,656 + GFF2555 0.66 -0.1
617,656 + GFF2555 0.66 -0.3
617,656 + GFF2555 0.66 -0.1
617,656 + GFF2555 0.66 -1.2
617,656 + GFF2555 0.66 -1.3
617,657 - GFF2555 0.66 -0.8
617,657 - GFF2555 0.66 -1.1
617,657 - GFF2555 0.66 -3.5
617,657 - GFF2555 0.66 +0.7
617,657 - GFF2555 0.66 +1.8
617,657 - GFF2555 0.66 +0.5
617,657 - GFF2555 0.66 -1.1
617,657 - GFF2555 0.66 -0.6
617,950 + +1.2
617,950 + -2.4
617,950 + -1.1
617,950 + +0.9
617,950 + -2.2
617,951 - -2.2
617,951 - +1.0
617,951 - +0.4
617,951 - -1.8
618,020 - +1.0
618,020 - -1.9
618,032 + -0.1
618,032 + +0.6
618,032 + -0.8
618,032 + +0.5
618,033 - +0.5
618,033 - +0.9
618,203 + GFF2556 0.70 -1.4
618,203 + GFF2556 0.70 +1.0
618,203 + GFF2556 0.70 +0.2
618,203 + GFF2556 0.70 -1.1
618,203 + GFF2556 0.70 +0.3
618,203 + GFF2556 0.70 +1.1
618,203 + GFF2556 0.70 -0.6
618,203 + GFF2556 0.70 -0.2
618,204 - GFF2556 0.70 -1.1
618,204 - GFF2556 0.70 +2.0
618,204 - GFF2556 0.70 -0.3
618,204 - GFF2556 0.70 -0.7
618,219 - GFF2556 0.78 +0.1
618,500 + GFF2557 0.32 -2.3
618,500 + GFF2557 0.32 +0.7
618,708 - GFF2557 0.72 +0.1
618,942 + -0.1
618,942 + -1.5
619,070 + GFF2558 0.21 -2.6
619,071 - GFF2558 0.21 -1.4
619,142 + GFF2558 0.34 +1.2
619,142 + GFF2558 0.34 +0.7
619,142 + GFF2558 0.34 +0.7

Or see this region's nucleotide sequence