Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2468 and GFF2469 are separated by 75 nucleotides GFF2469 and GFF2470 are separated by 2 nucleotides GFF2470 and GFF2471 are separated by 25 nucleotides
GFF2468 - Outer membrane protein assembly factor YaeT, at 527,524 to 529,926
GFF2468
GFF2469 - hypothetical protein, at 530,002 to 530,610
GFF2469
GFF2470 - no description, at 530,613 to 530,798
GFF2470
GFF2471 - Outer membrane porin protein 32 precursor, at 530,824 to 531,981
GFF2471
Position (kb) 530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 529.028 kb on + strand, within GFF2468 at 529.028 kb on + strand, within GFF2468 at 529.226 kb on + strand, within GFF2468 at 529.226 kb on + strand, within GFF2468 at 529.227 kb on - strand, within GFF2468 at 529.227 kb on - strand, within GFF2468 at 529.227 kb on - strand, within GFF2468 at 529.275 kb on - strand, within GFF2468 at 529.475 kb on + strand, within GFF2468 at 529.494 kb on - strand, within GFF2468 at 529.754 kb on + strand at 529.754 kb on + strand at 529.754 kb on + strand at 529.754 kb on + strand at 529.755 kb on - strand at 530.060 kb on - strand at 530.114 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.159 kb on + strand, within GFF2469 at 530.160 kb on - strand, within GFF2469 at 530.160 kb on - strand, within GFF2469 at 530.160 kb on - strand, within GFF2469 at 530.241 kb on - strand, within GFF2469 at 530.241 kb on - strand, within GFF2469 at 530.430 kb on - strand, within GFF2469 at 530.430 kb on - strand, within GFF2469 at 531.295 kb on + strand, within GFF2471 at 531.352 kb on + strand, within GFF2471 at 531.353 kb on - strand, within GFF2471 at 531.353 kb on - strand, within GFF2471
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 529,028 + GFF2468 0.63 -1.2 529,028 + GFF2468 0.63 -1.5 529,226 + GFF2468 0.71 +2.7 529,226 + GFF2468 0.71 -1.2 529,227 - GFF2468 0.71 -0.8 529,227 - GFF2468 0.71 -1.4 529,227 - GFF2468 0.71 -2.3 529,275 - GFF2468 0.73 -0.8 529,475 + GFF2468 0.81 +0.7 529,494 - GFF2468 0.82 +0.1 529,754 + +1.4 529,754 + +1.0 529,754 + -0.2 529,754 + -2.5 529,755 - -0.9 530,060 - -0.1 530,114 + GFF2469 0.18 -0.8 530,159 + GFF2469 0.26 +2.2 530,159 + GFF2469 0.26 +0.7 530,159 + GFF2469 0.26 -2.9 530,159 + GFF2469 0.26 -0.1 530,160 - GFF2469 0.26 +1.0 530,160 - GFF2469 0.26 -0.3 530,160 - GFF2469 0.26 -1.2 530,241 - GFF2469 0.39 -0.5 530,241 - GFF2469 0.39 -0.1 530,430 - GFF2469 0.70 +0.8 530,430 - GFF2469 0.70 +0.2 531,295 + GFF2471 0.41 +0.7 531,352 + GFF2471 0.46 -0.2 531,353 - GFF2471 0.46 -0.3 531,353 - GFF2471 0.46 +0.0
Or see this region's nucleotide sequence