Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2438 and GFF2439 are separated by 104 nucleotides GFF2439 and GFF2440 are separated by 19 nucleotides GFF2440 and GFF2441 are separated by 143 nucleotides
GFF2438 - Ferrichrome-iron receptor, at 488,339 to 490,795
GFF2438
GFF2439 - no description, at 490,900 to 491,910
GFF2439
GFF2440 - KEGG: RNA polymerase sigma-70 factor, ECF subfamily, at 491,930 to 492,406
GFF2440
GFF2441 - RND efflux system, inner membrane transporter, at 492,550 to 495,678
GFF2441
Position (kb) 490
491
492 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 490.053 kb on + strand, within GFF2438 at 490.054 kb on - strand, within GFF2438 at 490.054 kb on - strand, within GFF2438 at 490.113 kb on + strand, within GFF2438 at 490.113 kb on + strand, within GFF2438 at 490.114 kb on - strand, within GFF2438 at 490.116 kb on + strand, within GFF2438 at 490.204 kb on + strand, within GFF2438 at 490.204 kb on + strand, within GFF2438 at 490.205 kb on - strand, within GFF2438 at 490.206 kb on + strand, within GFF2438 at 490.207 kb on - strand, within GFF2438 at 490.207 kb on - strand, within GFF2438 at 490.207 kb on - strand, within GFF2438 at 490.338 kb on + strand, within GFF2438 at 490.339 kb on - strand, within GFF2438 at 490.582 kb on - strand at 490.848 kb on + strand at 491.006 kb on + strand, within GFF2439 at 491.006 kb on + strand, within GFF2439 at 491.006 kb on + strand, within GFF2439 at 491.006 kb on + strand, within GFF2439 at 491.072 kb on + strand, within GFF2439 at 491.072 kb on + strand, within GFF2439 at 491.072 kb on + strand, within GFF2439 at 491.073 kb on - strand, within GFF2439 at 491.314 kb on + strand, within GFF2439 at 491.314 kb on + strand, within GFF2439 at 491.315 kb on - strand, within GFF2439 at 491.444 kb on + strand, within GFF2439 at 491.549 kb on + strand, within GFF2439 at 491.567 kb on + strand, within GFF2439 at 491.567 kb on + strand, within GFF2439 at 492.033 kb on + strand, within GFF2440 at 492.033 kb on + strand, within GFF2440 at 492.033 kb on + strand, within GFF2440 at 492.033 kb on + strand, within GFF2440 at 492.033 kb on + strand, within GFF2440 at 492.034 kb on - strand, within GFF2440 at 492.034 kb on - strand, within GFF2440 at 492.034 kb on - strand, within GFF2440 at 492.034 kb on - strand, within GFF2440 at 492.034 kb on - strand, within GFF2440 at 492.252 kb on + strand, within GFF2440 at 492.253 kb on - strand, within GFF2440 at 492.253 kb on - strand, within GFF2440 at 492.315 kb on + strand, within GFF2440 at 492.315 kb on + strand, within GFF2440 at 492.315 kb on + strand, within GFF2440 at 492.315 kb on + strand, within GFF2440 at 492.316 kb on - strand, within GFF2440 at 492.316 kb on - strand, within GFF2440 at 492.316 kb on - strand, within GFF2440 at 492.316 kb on - strand, within GFF2440 at 492.316 kb on - strand, within GFF2440 at 492.316 kb on - strand, within GFF2440 at 492.374 kb on - strand at 492.390 kb on + strand at 492.390 kb on + strand at 492.390 kb on + strand at 492.390 kb on + strand at 492.390 kb on + strand at 492.390 kb on + strand at 492.390 kb on + strand at 492.390 kb on + strand at 492.391 kb on - strand at 492.391 kb on - strand at 492.391 kb on - strand at 492.391 kb on - strand at 492.393 kb on + strand at 492.393 kb on + strand at 492.393 kb on + strand at 492.393 kb on + strand at 492.394 kb on - strand at 492.409 kb on + strand at 492.409 kb on + strand at 492.410 kb on - strand at 492.410 kb on - strand at 492.491 kb on - strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.504 kb on - strand at 492.508 kb on - strand at 492.508 kb on - strand at 492.508 kb on - strand at 492.508 kb on - strand at 492.508 kb on - strand at 492.508 kb on - strand at 492.508 kb on - strand at 492.508 kb on - strand at 492.508 kb on - strand at 492.530 kb on + strand at 492.530 kb on + strand at 492.530 kb on + strand at 492.531 kb on - strand at 492.531 kb on - strand at 492.531 kb on - strand at 492.531 kb on - strand at 492.617 kb on + strand at 492.617 kb on + strand at 492.617 kb on + strand at 492.618 kb on - strand at 492.618 kb on - strand at 492.618 kb on - strand at 492.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 490,053 + GFF2438 0.70 -0.3 490,054 - GFF2438 0.70 +2.1 490,054 - GFF2438 0.70 -1.6 490,113 + GFF2438 0.72 +0.2 490,113 + GFF2438 0.72 +0.9 490,114 - GFF2438 0.72 +0.5 490,116 + GFF2438 0.72 -0.7 490,204 + GFF2438 0.76 -1.9 490,204 + GFF2438 0.76 -0.1 490,205 - GFF2438 0.76 -3.1 490,206 + GFF2438 0.76 +0.1 490,207 - GFF2438 0.76 +1.7 490,207 - GFF2438 0.76 +1.7 490,207 - GFF2438 0.76 -1.4 490,338 + GFF2438 0.81 -1.9 490,339 - GFF2438 0.81 +0.3 490,582 - +0.5 490,848 + +2.2 491,006 + GFF2439 0.10 -0.9 491,006 + GFF2439 0.10 +1.0 491,006 + GFF2439 0.10 -3.3 491,006 + GFF2439 0.10 +1.2 491,072 + GFF2439 0.17 -0.8 491,072 + GFF2439 0.17 -1.3 491,072 + GFF2439 0.17 -0.1 491,073 - GFF2439 0.17 -1.3 491,314 + GFF2439 0.41 -2.4 491,314 + GFF2439 0.41 +0.4 491,315 - GFF2439 0.41 -2.6 491,444 + GFF2439 0.54 +0.2 491,549 + GFF2439 0.64 +1.8 491,567 + GFF2439 0.66 +0.4 491,567 + GFF2439 0.66 +0.1 492,033 + GFF2440 0.22 -0.1 492,033 + GFF2440 0.22 -0.0 492,033 + GFF2440 0.22 +0.1 492,033 + GFF2440 0.22 +0.9 492,033 + GFF2440 0.22 +1.7 492,034 - GFF2440 0.22 -0.3 492,034 - GFF2440 0.22 +2.7 492,034 - GFF2440 0.22 +1.9 492,034 - GFF2440 0.22 -2.7 492,034 - GFF2440 0.22 -0.8 492,252 + GFF2440 0.68 +1.7 492,253 - GFF2440 0.68 -3.5 492,253 - GFF2440 0.68 -1.2 492,315 + GFF2440 0.81 -2.2 492,315 + GFF2440 0.81 -2.8 492,315 + GFF2440 0.81 -1.3 492,315 + GFF2440 0.81 -1.3 492,316 - GFF2440 0.81 -0.3 492,316 - GFF2440 0.81 -0.6 492,316 - GFF2440 0.81 -0.8 492,316 - GFF2440 0.81 +0.8 492,316 - GFF2440 0.81 +0.9 492,316 - GFF2440 0.81 -1.8 492,374 - -1.7 492,390 + -1.4 492,390 + -1.1 492,390 + -4.5 492,390 + -1.5 492,390 + +1.5 492,390 + -2.7 492,390 + +1.7 492,390 + -2.8 492,391 - -1.1 492,391 - -1.3 492,391 - +1.1 492,391 - -2.9 492,393 + -0.6 492,393 + -1.1 492,393 + -1.6 492,393 + +0.2 492,394 - -0.1 492,409 + +0.4 492,409 + +0.7 492,410 - +0.0 492,410 - -0.9 492,491 - -1.9 492,503 + -1.5 492,503 + +1.0 492,504 - -0.6 492,508 - -0.5 492,508 - +3.6 492,508 - -1.3 492,508 - +0.7 492,508 - -0.2 492,508 - -1.0 492,508 - -1.1 492,508 - -0.1 492,508 - +3.0 492,530 + -0.6 492,530 + -2.5 492,530 + -1.7 492,531 - -0.8 492,531 - -0.1 492,531 - +0.3 492,531 - -0.7 492,617 + -3.3 492,617 + -1.7 492,617 + -0.3 492,618 - +1.5 492,618 - +0.7 492,618 - +0.2 492,618 - -0.1
Or see this region's nucleotide sequence