Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2435 and GFF2436 overlap by 4 nucleotides GFF2436 and GFF2437 are separated by 48 nucleotides GFF2437 and GFF2438 are separated by 16 nucleotides
GFF2435 - FIG138928: iron-regulated membrane protein, at 485,585 to 487,261
GFF2435
GFF2436 - no description, at 487,258 to 487,620
GFF2436
GFF2437 - hypothetical protein, at 487,669 to 488,322
GFF2437
GFF2438 - Ferrichrome-iron receptor, at 488,339 to 490,795
GFF2438
Position (kb) 487
488 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 486.269 kb on + strand, within GFF2435 at 486.521 kb on + strand, within GFF2435 at 486.521 kb on + strand, within GFF2435 at 486.522 kb on - strand, within GFF2435 at 486.719 kb on + strand, within GFF2435 at 486.719 kb on + strand, within GFF2435 at 486.720 kb on - strand, within GFF2435 at 486.720 kb on - strand, within GFF2435 at 487.270 kb on + strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.300 kb on + strand, within GFF2436 at 487.300 kb on + strand, within GFF2436 at 487.459 kb on - strand, within GFF2436 at 487.459 kb on - strand, within GFF2436 at 487.529 kb on - strand, within GFF2436 at 487.753 kb on + strand, within GFF2437 at 487.753 kb on + strand, within GFF2437 at 487.754 kb on - strand, within GFF2437 at 487.987 kb on + strand, within GFF2437 at 487.988 kb on - strand, within GFF2437 at 488.200 kb on + strand, within GFF2437 at 488.200 kb on + strand, within GFF2437 at 488.200 kb on + strand, within GFF2437 at 488.201 kb on - strand, within GFF2437 at 488.257 kb on + strand at 488.341 kb on - strand at 488.349 kb on + strand at 488.349 kb on + strand at 488.349 kb on + strand at 488.350 kb on - strand at 488.385 kb on + strand at 488.385 kb on + strand at 488.388 kb on + strand at 488.389 kb on - strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.418 kb on + strand at 488.419 kb on - strand at 488.419 kb on - strand at 488.419 kb on - strand at 488.419 kb on - strand at 488.419 kb on - strand at 488.419 kb on - strand at 488.419 kb on - strand at 488.502 kb on + strand at 488.502 kb on + strand at 488.503 kb on - strand at 488.535 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 486,269 + GFF2435 0.41 +1.5 486,521 + GFF2435 0.56 +0.3 486,521 + GFF2435 0.56 -0.8 486,522 - GFF2435 0.56 -2.4 486,719 + GFF2435 0.68 +0.8 486,719 + GFF2435 0.68 +1.2 486,720 - GFF2435 0.68 -1.6 486,720 - GFF2435 0.68 -0.8 487,270 + -0.1 487,271 - -0.6 487,271 - -1.9 487,271 - -0.2 487,271 - -1.0 487,271 - +0.5 487,271 - +1.0 487,300 + GFF2436 0.12 +1.4 487,300 + GFF2436 0.12 +2.2 487,459 - GFF2436 0.55 +1.5 487,459 - GFF2436 0.55 -2.3 487,529 - GFF2436 0.75 +0.7 487,753 + GFF2437 0.13 -1.1 487,753 + GFF2437 0.13 -1.2 487,754 - GFF2437 0.13 -1.5 487,987 + GFF2437 0.49 +0.8 487,988 - GFF2437 0.49 -1.7 488,200 + GFF2437 0.81 -2.3 488,200 + GFF2437 0.81 -0.1 488,200 + GFF2437 0.81 -0.8 488,201 - GFF2437 0.81 -0.8 488,257 + -2.3 488,341 - +0.8 488,349 + +2.5 488,349 + +0.2 488,349 + -2.4 488,350 - +0.2 488,385 + +1.3 488,385 + -0.3 488,388 + +0.8 488,389 - +0.8 488,418 + +0.2 488,418 + -0.5 488,418 + -0.8 488,418 + +0.5 488,418 + +0.6 488,418 + +0.9 488,418 + -1.3 488,418 + -1.8 488,418 + -0.1 488,418 + -0.6 488,418 + +0.0 488,418 + -0.6 488,418 + +1.2 488,418 + -1.1 488,418 + -0.6 488,418 + -0.4 488,419 - -1.6 488,419 - +2.9 488,419 - -0.3 488,419 - -0.9 488,419 - -0.3 488,419 - -2.3 488,419 - -2.3 488,502 + -2.0 488,502 + -0.3 488,503 - -4.1 488,535 + +0.4
Or see this region's nucleotide sequence