Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2409 and GFF2410 are separated by 97 nucleotides GFF2410 and GFF2411 are separated by 75 nucleotides GFF2411 and GFF2412 are separated by 13 nucleotides
GFF2409 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 461,412 to 462,752
GFF2409
GFF2410 - Intracellular protease, at 462,850 to 463,452
GFF2410
GFF2411 - no description, at 463,528 to 463,890
GFF2411
GFF2412 - Transcriptional regulator, MarR family, at 463,904 to 464,458
GFF2412
Position (kb) 462
463
464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 461.882 kb on + strand, within GFF2409 at 461.882 kb on + strand, within GFF2409 at 461.882 kb on + strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.884 kb on + strand, within GFF2409 at 461.884 kb on + strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.930 kb on + strand, within GFF2409 at 461.930 kb on + strand, within GFF2409 at 462.382 kb on + strand, within GFF2409 at 462.383 kb on - strand, within GFF2409 at 462.383 kb on - strand, within GFF2409 at 462.737 kb on - strand at 462.763 kb on - strand at 462.763 kb on - strand at 462.785 kb on + strand at 462.785 kb on + strand at 462.802 kb on - strand at 462.855 kb on + strand at 463.313 kb on - strand, within GFF2410 at 463.375 kb on + strand, within GFF2410 at 463.375 kb on + strand, within GFF2410 at 463.376 kb on - strand, within GFF2410 at 463.405 kb on + strand at 463.405 kb on + strand at 463.405 kb on + strand at 463.405 kb on + strand at 463.405 kb on + strand at 463.406 kb on - strand at 463.406 kb on - strand at 463.426 kb on + strand at 463.426 kb on + strand at 463.427 kb on - strand at 463.427 kb on - strand at 463.427 kb on - strand at 463.438 kb on + strand at 463.450 kb on + strand at 463.451 kb on - strand at 463.451 kb on - strand at 463.492 kb on - strand at 463.492 kb on - strand at 463.493 kb on + strand at 463.493 kb on + strand at 463.493 kb on + strand at 463.493 kb on + strand at 463.493 kb on + strand at 463.493 kb on + strand at 463.493 kb on + strand at 463.493 kb on + strand at 463.504 kb on - strand at 463.504 kb on - strand at 464.116 kb on - strand, within GFF2412 at 464.394 kb on + strand, within GFF2412
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 461,882 + GFF2409 0.35 +1.2 461,882 + GFF2409 0.35 +0.4 461,882 + GFF2409 0.35 +0.2 461,883 - GFF2409 0.35 -2.1 461,883 - GFF2409 0.35 +1.2 461,883 - GFF2409 0.35 +1.2 461,883 - GFF2409 0.35 -1.3 461,883 - GFF2409 0.35 +2.1 461,883 - GFF2409 0.35 +0.1 461,884 + GFF2409 0.35 -2.4 461,884 + GFF2409 0.35 -1.0 461,885 - GFF2409 0.35 +2.7 461,885 - GFF2409 0.35 -2.4 461,885 - GFF2409 0.35 -1.1 461,885 - GFF2409 0.35 -0.1 461,885 - GFF2409 0.35 -1.5 461,930 + GFF2409 0.39 -2.8 461,930 + GFF2409 0.39 -0.9 462,382 + GFF2409 0.72 -0.4 462,383 - GFF2409 0.72 -1.7 462,383 - GFF2409 0.72 -0.0 462,737 - -1.5 462,763 - -2.5 462,763 - -1.3 462,785 + +0.4 462,785 + -0.3 462,802 - +0.6 462,855 + +0.2 463,313 - GFF2410 0.77 +0.8 463,375 + GFF2410 0.87 -0.9 463,375 + GFF2410 0.87 -1.8 463,376 - GFF2410 0.87 -0.8 463,405 + -0.9 463,405 + +0.2 463,405 + -0.9 463,405 + +1.4 463,405 + -2.6 463,406 - -1.3 463,406 - -1.6 463,426 + +1.0 463,426 + -0.8 463,427 - +0.1 463,427 - -0.7 463,427 - -0.3 463,438 + +1.4 463,450 + -1.6 463,451 - -2.3 463,451 - +0.2 463,492 - -0.1 463,492 - -1.0 463,493 + +1.2 463,493 + -2.4 463,493 + +0.2 463,493 + +2.2 463,493 + -2.2 463,493 + +0.2 463,493 + -0.3 463,493 + +0.1 463,504 - +0.3 463,504 - -1.4 464,116 - GFF2412 0.38 -1.3 464,394 + GFF2412 0.88 -1.7
Or see this region's nucleotide sequence