Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2406 and GFF2407 are separated by 8 nucleotides GFF2407 and GFF2408 are separated by 12 nucleotides GFF2408 and GFF2409 are separated by 23 nucleotides
GFF2406 - DipZ protein, at 458,306 to 460,159
GFF2406
GFF2407 - hypothetical protein, at 460,168 to 460,629
GFF2407
GFF2408 - FIG00976241: hypothetical protein, at 460,642 to 461,388
GFF2408
GFF2409 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 461,412 to 462,752
GFF2409
Position (kb) 460
461
462 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 459.729 kb on - strand, within GFF2406 at 459.797 kb on + strand, within GFF2406 at 459.797 kb on + strand, within GFF2406 at 459.798 kb on - strand, within GFF2406 at 459.798 kb on - strand, within GFF2406 at 460.182 kb on - strand at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.333 kb on + strand, within GFF2407 at 460.334 kb on - strand, within GFF2407 at 460.334 kb on - strand, within GFF2407 at 460.334 kb on - strand, within GFF2407 at 460.334 kb on - strand, within GFF2407 at 460.334 kb on - strand, within GFF2407 at 460.468 kb on + strand, within GFF2407 at 460.468 kb on + strand, within GFF2407 at 460.469 kb on - strand, within GFF2407 at 460.505 kb on - strand, within GFF2407 at 461.042 kb on + strand, within GFF2408 at 461.043 kb on - strand, within GFF2408 at 461.043 kb on - strand, within GFF2408 at 461.245 kb on - strand, within GFF2408 at 461.336 kb on + strand at 461.337 kb on - strand at 461.400 kb on + strand at 461.401 kb on - strand at 461.401 kb on - strand at 461.401 kb on - strand at 461.401 kb on - strand at 461.617 kb on + strand, within GFF2409 at 461.618 kb on - strand, within GFF2409 at 461.882 kb on + strand, within GFF2409 at 461.882 kb on + strand, within GFF2409 at 461.882 kb on + strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.883 kb on - strand, within GFF2409 at 461.884 kb on + strand, within GFF2409 at 461.884 kb on + strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.885 kb on - strand, within GFF2409 at 461.930 kb on + strand, within GFF2409 at 461.930 kb on + strand, within GFF2409 at 462.382 kb on + strand, within GFF2409 at 462.383 kb on - strand, within GFF2409 at 462.383 kb on - strand, within GFF2409
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 459,729 - GFF2406 0.77 -0.2 459,797 + GFF2406 0.80 +1.1 459,797 + GFF2406 0.80 +2.2 459,798 - GFF2406 0.80 +2.9 459,798 - GFF2406 0.80 +1.1 460,182 - +0.1 460,333 + GFF2407 0.36 -1.6 460,333 + GFF2407 0.36 +0.0 460,333 + GFF2407 0.36 -2.2 460,333 + GFF2407 0.36 -0.0 460,333 + GFF2407 0.36 +1.8 460,333 + GFF2407 0.36 +1.2 460,333 + GFF2407 0.36 -1.7 460,333 + GFF2407 0.36 -0.0 460,333 + GFF2407 0.36 -0.1 460,334 - GFF2407 0.36 -1.6 460,334 - GFF2407 0.36 -0.1 460,334 - GFF2407 0.36 -1.1 460,334 - GFF2407 0.36 +1.0 460,334 - GFF2407 0.36 -0.6 460,468 + GFF2407 0.65 -0.9 460,468 + GFF2407 0.65 -0.7 460,469 - GFF2407 0.65 +0.7 460,505 - GFF2407 0.73 +2.2 461,042 + GFF2408 0.54 -1.2 461,043 - GFF2408 0.54 -0.6 461,043 - GFF2408 0.54 -1.1 461,245 - GFF2408 0.81 +0.2 461,336 + -2.0 461,337 - -0.3 461,400 + +1.2 461,401 - -0.3 461,401 - -2.6 461,401 - -2.8 461,401 - -0.3 461,617 + GFF2409 0.15 -1.2 461,618 - GFF2409 0.15 +0.3 461,882 + GFF2409 0.35 +1.2 461,882 + GFF2409 0.35 +0.4 461,882 + GFF2409 0.35 +0.2 461,883 - GFF2409 0.35 -2.1 461,883 - GFF2409 0.35 +1.2 461,883 - GFF2409 0.35 +1.2 461,883 - GFF2409 0.35 -1.3 461,883 - GFF2409 0.35 +2.1 461,883 - GFF2409 0.35 +0.1 461,884 + GFF2409 0.35 -2.4 461,884 + GFF2409 0.35 -1.0 461,885 - GFF2409 0.35 +2.7 461,885 - GFF2409 0.35 -2.4 461,885 - GFF2409 0.35 -1.1 461,885 - GFF2409 0.35 -0.1 461,885 - GFF2409 0.35 -1.5 461,930 + GFF2409 0.39 -2.8 461,930 + GFF2409 0.39 -0.9 462,382 + GFF2409 0.72 -0.4 462,383 - GFF2409 0.72 -1.7 462,383 - GFF2409 0.72 -0.0
Or see this region's nucleotide sequence