Strain Fitness in Variovorax sp. SCN45 around GFF2337

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2335 and GFF2336 overlap by 4 nucleotidesGFF2336 and GFF2337 are separated by 141 nucleotidesGFF2337 and GFF2338 are separated by 81 nucleotides GFF2335 - Lactoylglutathione lyase and related lyases, at 385,443 to 385,859 GFF2335 GFF2336 - Transcriptional regulator, AraC family, at 385,856 to 386,329 GFF2336 GFF2337 - hypothetical protein, at 386,471 to 388,066 GFF2337 GFF2338 - Amidase family protein Atu4441, at 388,148 to 389,554 GFF2338 Position (kb) 386 387 388 389Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 385.576 kb on + strand, within GFF2335at 385.576 kb on + strand, within GFF2335at 385.577 kb on - strand, within GFF2335at 385.577 kb on - strand, within GFF2335at 385.745 kb on - strand, within GFF2335at 385.795 kb on + strand, within GFF2335at 385.795 kb on + strand, within GFF2335at 385.795 kb on + strand, within GFF2335at 385.795 kb on + strand, within GFF2335at 385.795 kb on + strand, within GFF2335at 385.795 kb on + strand, within GFF2335at 385.795 kb on + strand, within GFF2335at 385.796 kb on - strand, within GFF2335at 385.796 kb on - strand, within GFF2335at 385.796 kb on - strand, within GFF2335at 385.828 kb on + strandat 385.829 kb on - strandat 385.829 kb on - strandat 385.829 kb on - strandat 385.829 kb on - strandat 385.829 kb on - strandat 385.829 kb on - strandat 385.829 kb on - strandat 385.836 kb on + strandat 385.837 kb on - strandat 385.837 kb on - strandat 385.847 kb on + strandat 385.847 kb on + strandat 386.163 kb on + strand, within GFF2336at 386.231 kb on + strand, within GFF2336at 386.424 kb on + strandat 386.424 kb on + strandat 386.425 kb on - strandat 386.425 kb on - strandat 386.425 kb on - strandat 386.493 kb on + strandat 386.493 kb on + strandat 386.494 kb on - strandat 386.495 kb on + strandat 386.495 kb on + strandat 386.496 kb on - strandat 386.496 kb on - strandat 386.496 kb on - strandat 386.496 kb on - strandat 386.709 kb on + strand, within GFF2337at 386.710 kb on - strand, within GFF2337at 386.778 kb on + strand, within GFF2337at 386.823 kb on + strand, within GFF2337at 386.823 kb on + strand, within GFF2337at 386.824 kb on - strand, within GFF2337at 386.824 kb on - strand, within GFF2337at 386.829 kb on + strand, within GFF2337at 386.830 kb on - strand, within GFF2337at 386.982 kb on + strand, within GFF2337at 386.982 kb on + strand, within GFF2337at 386.982 kb on + strand, within GFF2337at 386.982 kb on + strand, within GFF2337at 386.982 kb on + strand, within GFF2337at 386.983 kb on - strand, within GFF2337at 386.983 kb on - strand, within GFF2337at 386.983 kb on - strand, within GFF2337at 386.983 kb on - strand, within GFF2337at 387.147 kb on + strand, within GFF2337at 387.148 kb on - strand, within GFF2337at 387.148 kb on - strand, within GFF2337at 387.148 kb on - strand, within GFF2337at 387.186 kb on + strand, within GFF2337at 387.372 kb on - strand, within GFF2337at 387.814 kb on - strand, within GFF2337at 387.903 kb on + strand, within GFF2337at 387.903 kb on + strand, within GFF2337at 387.903 kb on + strand, within GFF2337at 387.903 kb on + strand, within GFF2337at 387.903 kb on + strand, within GFF2337at 387.903 kb on + strand, within GFF2337at 387.903 kb on + strand, within GFF2337at 387.903 kb on + strand, within GFF2337at 387.903 kb on + strand, within GFF2337at 387.904 kb on - strand, within GFF2337at 387.904 kb on - strand, within GFF2337at 387.904 kb on - strand, within GFF2337at 387.904 kb on - strand, within GFF2337at 387.904 kb on - strand, within GFF2337at 388.077 kb on + strandat 388.437 kb on + strand, within GFF2338at 388.438 kb on - strand, within GFF2338at 388.554 kb on + strand, within GFF2338at 388.554 kb on + strand, within GFF2338at 388.554 kb on + strand, within GFF2338at 388.554 kb on + strand, within GFF2338at 388.555 kb on - strand, within GFF2338at 388.730 kb on + strand, within GFF2338at 388.730 kb on + strand, within GFF2338at 388.730 kb on + strand, within GFF2338at 388.731 kb on - strand, within GFF2338at 388.731 kb on - strand, within GFF2338at 388.731 kb on - strand, within GFF2338at 388.731 kb on - strand, within GFF2338at 388.944 kb on + strand, within GFF2338at 388.944 kb on + strand, within GFF2338at 388.944 kb on + strand, within GFF2338at 388.945 kb on - strand, within GFF2338at 388.945 kb on - strand, within GFF2338at 388.945 kb on - strand, within GFF2338at 388.945 kb on - strand, within GFF2338

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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385,576 + GFF2335 0.32 -2.4
385,576 + GFF2335 0.32 -1.1
385,577 - GFF2335 0.32 -1.2
385,577 - GFF2335 0.32 -1.4
385,745 - GFF2335 0.72 -0.5
385,795 + GFF2335 0.84 -1.3
385,795 + GFF2335 0.84 -0.3
385,795 + GFF2335 0.84 +2.0
385,795 + GFF2335 0.84 +0.2
385,795 + GFF2335 0.84 -1.1
385,795 + GFF2335 0.84 -0.4
385,795 + GFF2335 0.84 -0.6
385,796 - GFF2335 0.85 +0.6
385,796 - GFF2335 0.85 -3.5
385,796 - GFF2335 0.85 -0.7
385,828 + -3.4
385,829 - +0.8
385,829 - -0.3
385,829 - +0.1
385,829 - -1.9
385,829 - +0.1
385,829 - +0.3
385,829 - -1.7
385,836 + +2.8
385,837 - -0.7
385,837 - -0.3
385,847 + -0.6
385,847 + -1.7
386,163 + GFF2336 0.65 +0.5
386,231 + GFF2336 0.79 -0.5
386,424 + -1.6
386,424 + +0.4
386,425 - -2.4
386,425 - +0.3
386,425 - -1.2
386,493 + +0.5
386,493 + +1.0
386,494 - +2.1
386,495 + -2.3
386,495 + -0.1
386,496 - +1.1
386,496 - +1.5
386,496 - -2.4
386,496 - -2.1
386,709 + GFF2337 0.15 +1.0
386,710 - GFF2337 0.15 -2.0
386,778 + GFF2337 0.19 +2.3
386,823 + GFF2337 0.22 -0.5
386,823 + GFF2337 0.22 -1.1
386,824 - GFF2337 0.22 +2.5
386,824 - GFF2337 0.22 +0.7
386,829 + GFF2337 0.22 +2.8
386,830 - GFF2337 0.22 -0.6
386,982 + GFF2337 0.32 -2.5
386,982 + GFF2337 0.32 -0.6
386,982 + GFF2337 0.32 -0.3
386,982 + GFF2337 0.32 -0.6
386,982 + GFF2337 0.32 -2.0
386,983 - GFF2337 0.32 +1.3
386,983 - GFF2337 0.32 +2.3
386,983 - GFF2337 0.32 -1.9
386,983 - GFF2337 0.32 +0.3
387,147 + GFF2337 0.42 +0.3
387,148 - GFF2337 0.42 -1.2
387,148 - GFF2337 0.42 -0.3
387,148 - GFF2337 0.42 -1.8
387,186 + GFF2337 0.45 +0.1
387,372 - GFF2337 0.56 -1.9
387,814 - GFF2337 0.84 +0.4
387,903 + GFF2337 0.90 +1.1
387,903 + GFF2337 0.90 +0.1
387,903 + GFF2337 0.90 +0.6
387,903 + GFF2337 0.90 +0.9
387,903 + GFF2337 0.90 -1.8
387,903 + GFF2337 0.90 -2.6
387,903 + GFF2337 0.90 +0.7
387,903 + GFF2337 0.90 -1.1
387,903 + GFF2337 0.90 -2.4
387,904 - GFF2337 0.90 -0.1
387,904 - GFF2337 0.90 -1.9
387,904 - GFF2337 0.90 +0.7
387,904 - GFF2337 0.90 -0.7
387,904 - GFF2337 0.90 +0.7
388,077 + -2.1
388,437 + GFF2338 0.21 -0.1
388,438 - GFF2338 0.21 -2.0
388,554 + GFF2338 0.29 -1.8
388,554 + GFF2338 0.29 -1.7
388,554 + GFF2338 0.29 +2.1
388,554 + GFF2338 0.29 +1.8
388,555 - GFF2338 0.29 +1.7
388,730 + GFF2338 0.41 -1.9
388,730 + GFF2338 0.41 -1.4
388,730 + GFF2338 0.41 -0.6
388,731 - GFF2338 0.41 +0.3
388,731 - GFF2338 0.41 +0.6
388,731 - GFF2338 0.41 -2.9
388,731 - GFF2338 0.41 -1.1
388,944 + GFF2338 0.57 +2.1
388,944 + GFF2338 0.57 +1.4
388,944 + GFF2338 0.57 +0.3
388,945 - GFF2338 0.57 +0.1
388,945 - GFF2338 0.57 -0.8
388,945 - GFF2338 0.57 +0.2
388,945 - GFF2338 0.57 +2.0

Or see this region's nucleotide sequence