Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF22 and GFF23 are separated by 18 nucleotides GFF23 and GFF24 are separated by 8 nucleotides
GFF22 - hypothetical protein, at 23,628 to 26,267
GFF22
GFF23 - no description, at 26,286 to 26,720
GFF23
GFF24 - VgrG protein, at 26,729 to 29,071
GFF24
Position (kb) 26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 25.446 kb on + strand, within GFF22 at 25.446 kb on + strand, within GFF22 at 25.446 kb on + strand, within GFF22 at 25.447 kb on - strand, within GFF22 at 25.675 kb on + strand, within GFF22 at 26.359 kb on + strand, within GFF23 at 26.638 kb on + strand, within GFF23 at 26.638 kb on + strand, within GFF23 at 26.639 kb on - strand, within GFF23 at 26.757 kb on + strand at 26.757 kb on + strand at 26.758 kb on - strand at 26.778 kb on + strand at 26.850 kb on + strand at 26.850 kb on + strand at 26.851 kb on - strand at 26.899 kb on - strand at 26.899 kb on - strand at 27.003 kb on + strand, within GFF24 at 27.015 kb on + strand, within GFF24 at 27.015 kb on + strand, within GFF24 at 27.036 kb on + strand, within GFF24 at 27.036 kb on + strand, within GFF24 at 27.036 kb on + strand, within GFF24 at 27.057 kb on + strand, within GFF24 at 27.057 kb on + strand, within GFF24 at 27.057 kb on + strand, within GFF24 at 27.058 kb on - strand, within GFF24 at 27.058 kb on - strand, within GFF24 at 27.058 kb on - strand, within GFF24 at 27.058 kb on - strand, within GFF24 at 27.078 kb on + strand, within GFF24 at 27.078 kb on + strand, within GFF24 at 27.283 kb on - strand, within GFF24 at 27.486 kb on + strand, within GFF24 at 27.486 kb on + strand, within GFF24 at 27.486 kb on + strand, within GFF24 at 27.486 kb on + strand, within GFF24
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 25,446 + GFF22 0.69 -3.2 25,446 + GFF22 0.69 -1.5 25,446 + GFF22 0.69 +0.3 25,447 - GFF22 0.69 -1.5 25,675 + GFF22 0.78 -2.3 26,359 + GFF23 0.17 -2.0 26,638 + GFF23 0.81 -1.3 26,638 + GFF23 0.81 -0.6 26,639 - GFF23 0.81 +3.2 26,757 + +1.7 26,757 + +0.7 26,758 - -0.5 26,778 + -1.7 26,850 + -0.3 26,850 + -2.6 26,851 - +0.7 26,899 - -1.3 26,899 - -1.3 27,003 + GFF24 0.12 -1.1 27,015 + GFF24 0.12 +0.9 27,015 + GFF24 0.12 -1.3 27,036 + GFF24 0.13 -2.8 27,036 + GFF24 0.13 -1.3 27,036 + GFF24 0.13 +1.1 27,057 + GFF24 0.14 -1.2 27,057 + GFF24 0.14 +1.5 27,057 + GFF24 0.14 -1.3 27,058 - GFF24 0.14 -1.2 27,058 - GFF24 0.14 -0.6 27,058 - GFF24 0.14 +1.7 27,058 - GFF24 0.14 -2.5 27,078 + GFF24 0.15 +1.0 27,078 + GFF24 0.15 -2.0 27,283 - GFF24 0.24 -0.3 27,486 + GFF24 0.32 +0.3 27,486 + GFF24 0.32 -1.6 27,486 + GFF24 0.32 +0.7 27,486 + GFF24 0.32 +1.6
Or see this region's nucleotide sequence