Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2259 and GFF2260 are separated by 27 nucleotides GFF2260 and GFF2261 are separated by 117 nucleotides GFF2261 and GFF2262 are separated by 151 nucleotides GFF2262 and GFF2263 are separated by 15 nucleotides
GFF2259 - Alcohol dehydrogenase (EC 1.1.1.1), at 314,793 to 315,854
GFF2259
GFF2260 - hypothetical protein, at 315,882 to 316,247
GFF2260
GFF2261 - Adenylate cyclase (EC 4.6.1.1), at 316,365 to 317,942
GFF2261
GFF2262 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 318,094 to 318,822
GFF2262
GFF2263 - putative membrane protein, at 318,838 to 319,311
GFF2263
Position (kb) 316
317
318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 315.459 kb on + strand, within GFF2259 at 315.460 kb on - strand, within GFF2259 at 315.460 kb on - strand, within GFF2259 at 315.460 kb on - strand, within GFF2259 at 315.597 kb on + strand, within GFF2259 at 315.597 kb on + strand, within GFF2259 at 315.597 kb on + strand, within GFF2259 at 315.675 kb on + strand, within GFF2259 at 315.675 kb on + strand, within GFF2259 at 315.675 kb on + strand, within GFF2259 at 315.676 kb on - strand, within GFF2259 at 315.777 kb on + strand at 315.883 kb on + strand at 315.884 kb on - strand at 315.884 kb on - strand at 315.925 kb on + strand, within GFF2260 at 315.925 kb on + strand, within GFF2260 at 315.925 kb on + strand, within GFF2260 at 316.073 kb on - strand, within GFF2260 at 316.073 kb on - strand, within GFF2260 at 316.139 kb on + strand, within GFF2260 at 316.139 kb on + strand, within GFF2260 at 316.140 kb on - strand, within GFF2260 at 316.140 kb on - strand, within GFF2260 at 316.159 kb on + strand, within GFF2260 at 316.159 kb on + strand, within GFF2260 at 316.159 kb on + strand, within GFF2260 at 316.160 kb on - strand, within GFF2260 at 316.160 kb on - strand, within GFF2260 at 316.363 kb on + strand at 316.363 kb on + strand at 316.363 kb on + strand at 316.363 kb on + strand at 316.363 kb on + strand at 316.363 kb on + strand at 316.363 kb on + strand at 316.363 kb on + strand at 316.363 kb on + strand at 316.364 kb on - strand at 316.364 kb on - strand at 316.364 kb on - strand at 316.364 kb on - strand at 316.364 kb on - strand at 316.367 kb on - strand at 316.367 kb on - strand at 316.393 kb on + strand at 316.393 kb on + strand at 316.394 kb on - strand at 316.394 kb on - strand at 316.394 kb on - strand at 316.588 kb on + strand, within GFF2261 at 316.589 kb on - strand, within GFF2261 at 316.855 kb on + strand, within GFF2261 at 316.855 kb on + strand, within GFF2261 at 316.855 kb on + strand, within GFF2261 at 316.855 kb on + strand, within GFF2261 at 316.855 kb on + strand, within GFF2261 at 316.855 kb on + strand, within GFF2261 at 316.856 kb on - strand, within GFF2261 at 316.856 kb on - strand, within GFF2261 at 316.856 kb on - strand, within GFF2261 at 316.856 kb on - strand, within GFF2261 at 316.856 kb on - strand, within GFF2261 at 316.856 kb on - strand, within GFF2261 at 317.339 kb on - strand, within GFF2261 at 317.339 kb on - strand, within GFF2261 at 317.638 kb on + strand, within GFF2261 at 317.638 kb on + strand, within GFF2261 at 317.638 kb on + strand, within GFF2261 at 317.638 kb on + strand, within GFF2261 at 317.639 kb on - strand, within GFF2261 at 317.639 kb on - strand, within GFF2261 at 317.639 kb on - strand, within GFF2261 at 317.639 kb on - strand, within GFF2261 at 317.639 kb on - strand, within GFF2261 at 317.639 kb on - strand, within GFF2261 at 317.639 kb on - strand, within GFF2261 at 317.657 kb on - strand, within GFF2261 at 317.657 kb on - strand, within GFF2261 at 317.666 kb on - strand, within GFF2261 at 317.818 kb on + strand at 317.896 kb on + strand at 317.896 kb on + strand at 317.896 kb on + strand at 317.896 kb on + strand at 317.896 kb on + strand at 317.896 kb on + strand at 317.897 kb on - strand at 317.897 kb on - strand at 317.935 kb on + strand at 317.935 kb on + strand at 317.935 kb on + strand at 317.935 kb on + strand at 317.935 kb on + strand at 317.935 kb on + strand at 317.936 kb on - strand at 317.936 kb on - strand at 317.936 kb on - strand at 317.936 kb on - strand at 318.054 kb on + strand at 318.054 kb on + strand at 318.054 kb on + strand at 318.055 kb on - strand at 318.113 kb on + strand at 318.113 kb on + strand at 318.114 kb on - strand at 318.298 kb on + strand, within GFF2262 at 318.299 kb on - strand, within GFF2262 at 318.917 kb on + strand, within GFF2263 at 318.917 kb on + strand, within GFF2263 at 318.917 kb on + strand, within GFF2263 at 318.918 kb on - strand, within GFF2263 at 318.918 kb on - strand, within GFF2263 at 318.918 kb on - strand, within GFF2263
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 315,459 + GFF2259 0.63 +0.6 315,460 - GFF2259 0.63 -1.0 315,460 - GFF2259 0.63 -1.1 315,460 - GFF2259 0.63 +3.4 315,597 + GFF2259 0.76 -1.2 315,597 + GFF2259 0.76 +1.3 315,597 + GFF2259 0.76 +0.0 315,675 + GFF2259 0.83 +1.5 315,675 + GFF2259 0.83 +0.6 315,675 + GFF2259 0.83 -1.1 315,676 - GFF2259 0.83 -2.4 315,777 + +0.8 315,883 + +0.3 315,884 - +3.3 315,884 - -1.0 315,925 + GFF2260 0.12 +0.1 315,925 + GFF2260 0.12 -0.7 315,925 + GFF2260 0.12 -0.2 316,073 - GFF2260 0.52 +0.3 316,073 - GFF2260 0.52 -1.8 316,139 + GFF2260 0.70 -1.1 316,139 + GFF2260 0.70 +0.7 316,140 - GFF2260 0.70 +0.7 316,140 - GFF2260 0.70 +1.4 316,159 + GFF2260 0.76 +0.5 316,159 + GFF2260 0.76 -3.6 316,159 + GFF2260 0.76 -3.1 316,160 - GFF2260 0.76 -0.7 316,160 - GFF2260 0.76 -1.0 316,363 + -1.1 316,363 + +0.8 316,363 + +0.5 316,363 + -1.7 316,363 + -1.2 316,363 + +1.7 316,363 + +0.2 316,363 + +1.3 316,363 + -0.3 316,364 - -1.0 316,364 - -1.1 316,364 - -0.7 316,364 - +1.6 316,364 - -1.7 316,367 - -0.7 316,367 - -0.9 316,393 + +1.0 316,393 + -0.8 316,394 - -1.9 316,394 - +0.2 316,394 - -1.0 316,588 + GFF2261 0.14 +0.8 316,589 - GFF2261 0.14 +0.2 316,855 + GFF2261 0.31 -1.3 316,855 + GFF2261 0.31 +1.1 316,855 + GFF2261 0.31 +0.3 316,855 + GFF2261 0.31 -0.1 316,855 + GFF2261 0.31 +1.6 316,855 + GFF2261 0.31 -0.2 316,856 - GFF2261 0.31 -0.5 316,856 - GFF2261 0.31 -0.3 316,856 - GFF2261 0.31 -1.6 316,856 - GFF2261 0.31 +0.7 316,856 - GFF2261 0.31 +0.6 316,856 - GFF2261 0.31 +1.5 317,339 - GFF2261 0.62 +1.3 317,339 - GFF2261 0.62 -0.5 317,638 + GFF2261 0.81 +1.1 317,638 + GFF2261 0.81 -1.5 317,638 + GFF2261 0.81 -0.6 317,638 + GFF2261 0.81 -0.7 317,639 - GFF2261 0.81 -1.0 317,639 - GFF2261 0.81 -1.8 317,639 - GFF2261 0.81 +0.6 317,639 - GFF2261 0.81 +0.2 317,639 - GFF2261 0.81 -1.8 317,639 - GFF2261 0.81 +0.2 317,639 - GFF2261 0.81 +0.0 317,657 - GFF2261 0.82 -0.8 317,657 - GFF2261 0.82 +0.2 317,666 - GFF2261 0.82 +1.2 317,818 + -0.6 317,896 + +0.2 317,896 + -0.0 317,896 + -0.6 317,896 + -2.5 317,896 + +0.5 317,896 + +2.5 317,897 - -1.1 317,897 - +0.9 317,935 + -0.3 317,935 + +0.0 317,935 + -1.1 317,935 + +0.2 317,935 + -2.2 317,935 + -1.8 317,936 - -1.9 317,936 - -0.5 317,936 - -2.1 317,936 - -0.5 318,054 + -0.6 318,054 + -2.2 318,054 + +1.6 318,055 - +0.0 318,113 + +0.8 318,113 + +0.3 318,114 - -0.7 318,298 + GFF2262 0.28 +1.0 318,299 - GFF2262 0.28 -1.2 318,917 + GFF2263 0.17 +1.9 318,917 + GFF2263 0.17 +1.9 318,917 + GFF2263 0.17 -0.4 318,918 - GFF2263 0.17 -0.1 318,918 - GFF2263 0.17 +1.0 318,918 - GFF2263 0.17 +0.0
Or see this region's nucleotide sequence