Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2255 and GFF2256 are separated by 16 nucleotides GFF2256 and GFF2257 overlap by 8 nucleotides GFF2257 and GFF2258 are separated by 96 nucleotides
GFF2255 - Ribonuclease Z (EC 3.1.26.11), at 310,457 to 311,413
GFF2255
GFF2256 - Uncharacterized protein YcgL, at 311,430 to 312,281
GFF2256
GFF2257 - RNA 3'-terminal phosphate cyclase (EC 6.5.1.4), at 312,274 to 313,311
GFF2257
GFF2258 - 4-hydroxybenzoate transporter, at 313,408 to 314,766
GFF2258
Position (kb) 312
313
314 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 311.330 kb on + strand at 311.369 kb on + strand at 311.613 kb on + strand, within GFF2256 at 311.634 kb on + strand, within GFF2256 at 311.635 kb on - strand, within GFF2256 at 311.635 kb on - strand, within GFF2256 at 311.862 kb on + strand, within GFF2256 at 311.863 kb on - strand, within GFF2256 at 311.928 kb on + strand, within GFF2256 at 311.929 kb on - strand, within GFF2256 at 311.934 kb on + strand, within GFF2256 at 311.934 kb on + strand, within GFF2256 at 311.935 kb on - strand, within GFF2256 at 312.222 kb on + strand at 312.526 kb on + strand, within GFF2257 at 312.526 kb on + strand, within GFF2257 at 312.997 kb on + strand, within GFF2257 at 312.997 kb on + strand, within GFF2257 at 313.382 kb on - strand at 313.487 kb on - strand at 313.844 kb on - strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.257 kb on + strand, within GFF2258 at 314.258 kb on - strand, within GFF2258 at 314.258 kb on - strand, within GFF2258
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 311,330 + -1.6 311,369 + +0.0 311,613 + GFF2256 0.21 -0.6 311,634 + GFF2256 0.24 +0.3 311,635 - GFF2256 0.24 -1.6 311,635 - GFF2256 0.24 +1.3 311,862 + GFF2256 0.51 +0.5 311,863 - GFF2256 0.51 +0.3 311,928 + GFF2256 0.58 +1.6 311,929 - GFF2256 0.59 -1.2 311,934 + GFF2256 0.59 -1.8 311,934 + GFF2256 0.59 -0.6 311,935 - GFF2256 0.59 +0.0 312,222 + -0.6 312,526 + GFF2257 0.24 -0.8 312,526 + GFF2257 0.24 +0.8 312,997 + GFF2257 0.70 +0.4 312,997 + GFF2257 0.70 +0.4 313,382 - +0.1 313,487 - +0.9 313,844 - GFF2258 0.32 +0.3 314,257 + GFF2258 0.62 +0.3 314,257 + GFF2258 0.62 -3.0 314,257 + GFF2258 0.62 -1.4 314,257 + GFF2258 0.62 -2.0 314,257 + GFF2258 0.62 -1.5 314,257 + GFF2258 0.62 -0.1 314,258 - GFF2258 0.63 +1.3 314,258 - GFF2258 0.63 +1.1
Or see this region's nucleotide sequence