Strain Fitness in Variovorax sp. SCN45 around GFF223

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF222 and GFF223 are separated by 24 nucleotidesGFF223 and GFF224 are separated by 15 nucleotidesGFF224 and GFF225 are separated by 189 nucleotides GFF222 - Translation initiation factor 2, at 246,275 to 249,256 GFF222 GFF223 - Transcription termination protein NusA, at 249,281 to 250,774 GFF223 GFF224 - Bacterial ribosome SSU maturation protein RimP, at 250,790 to 251,449 GFF224 GFF225 - Permeases of the major facilitator superfamily, at 251,639 to 252,835 GFF225 Position (kb) 249 250 251Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 251.470 kb on - strandat 251.521 kb on - strandat 251.521 kb on - strandat 251.521 kb on - strandat 251.521 kb on - strandat 251.546 kb on - strandat 251.546 kb on - strandat 251.546 kb on - strandat 251.546 kb on - strandat 251.546 kb on - strandat 251.546 kb on - strandat 251.546 kb on - strandat 251.546 kb on - strandat 251.546 kb on - strandat 251.546 kb on - strandat 251.571 kb on - strandat 251.603 kb on - strandat 251.603 kb on - strandat 251.603 kb on - strandat 251.603 kb on - strandat 251.603 kb on - strandat 251.608 kb on - strandat 251.608 kb on - strandat 251.608 kb on - strandat 251.608 kb on - strandat 251.619 kb on - strandat 251.649 kb on - strandat 251.649 kb on - strandat 251.649 kb on - strandat 251.649 kb on - strandat 251.685 kb on - strandat 251.685 kb on - strandat 251.685 kb on - strandat 251.685 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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251,470 - -0.8
251,521 - -0.3
251,521 - +0.2
251,521 - -2.7
251,521 - +1.2
251,546 - -0.6
251,546 - +1.2
251,546 - -2.7
251,546 - -1.6
251,546 - -0.7
251,546 - -0.8
251,546 - +0.2
251,546 - +0.1
251,546 - -2.1
251,546 - -1.3
251,571 - -1.3
251,603 - -2.0
251,603 - -0.2
251,603 - -0.8
251,603 - -2.7
251,603 - -0.9
251,608 - -1.4
251,608 - +1.2
251,608 - -1.1
251,608 - -1.0
251,619 - -1.7
251,649 - +2.3
251,649 - +1.9
251,649 - +0.7
251,649 - -1.6
251,685 - +0.2
251,685 - -0.6
251,685 - -2.8
251,685 - -2.4

Or see this region's nucleotide sequence