Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF222 and GFF223 are separated by 24 nucleotides GFF223 and GFF224 are separated by 15 nucleotides GFF224 and GFF225 are separated by 189 nucleotides
GFF222 - Translation initiation factor 2, at 246,275 to 249,256
GFF222
GFF223 - Transcription termination protein NusA, at 249,281 to 250,774
GFF223
GFF224 - Bacterial ribosome SSU maturation protein RimP, at 250,790 to 251,449
GFF224
GFF225 - Permeases of the major facilitator superfamily, at 251,639 to 252,835
GFF225
Position (kb)
249
250
251 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 251.470 kb on - strand at 251.521 kb on - strand at 251.521 kb on - strand at 251.521 kb on - strand at 251.521 kb on - strand at 251.546 kb on - strand at 251.546 kb on - strand at 251.546 kb on - strand at 251.546 kb on - strand at 251.546 kb on - strand at 251.546 kb on - strand at 251.546 kb on - strand at 251.546 kb on - strand at 251.546 kb on - strand at 251.546 kb on - strand at 251.571 kb on - strand at 251.603 kb on - strand at 251.603 kb on - strand at 251.603 kb on - strand at 251.603 kb on - strand at 251.603 kb on - strand at 251.608 kb on - strand at 251.608 kb on - strand at 251.608 kb on - strand at 251.608 kb on - strand at 251.619 kb on - strand at 251.649 kb on - strand at 251.649 kb on - strand at 251.649 kb on - strand at 251.649 kb on - strand at 251.685 kb on - strand at 251.685 kb on - strand at 251.685 kb on - strand at 251.685 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 251,470 - -0.8 251,521 - -0.3 251,521 - +0.2 251,521 - -2.7 251,521 - +1.2 251,546 - -0.6 251,546 - +1.2 251,546 - -2.7 251,546 - -1.6 251,546 - -0.7 251,546 - -0.8 251,546 - +0.2 251,546 - +0.1 251,546 - -2.1 251,546 - -1.3 251,571 - -1.3 251,603 - -2.0 251,603 - -0.2 251,603 - -0.8 251,603 - -2.7 251,603 - -0.9 251,608 - -1.4 251,608 - +1.2 251,608 - -1.1 251,608 - -1.0 251,619 - -1.7 251,649 - +2.3 251,649 - +1.9 251,649 - +0.7 251,649 - -1.6 251,685 - +0.2 251,685 - -0.6 251,685 - -2.8 251,685 - -2.4
Or see this region's nucleotide sequence