Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2106 and GFF2107 are separated by 32 nucleotides GFF2107 and GFF2108 overlap by 4 nucleotides
GFF2106 - hypothetical protein, at 156,566 to 157,726
GFF2106
GFF2107 - no description, at 157,759 to 158,112
GFF2107
GFF2108 - hypothetical protein, at 158,109 to 159,125
GFF2108
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 156.818 kb on + strand, within GFF2106 at 156.818 kb on + strand, within GFF2106 at 156.818 kb on + strand, within GFF2106 at 156.818 kb on + strand, within GFF2106 at 156.819 kb on - strand, within GFF2106 at 156.998 kb on + strand, within GFF2106 at 156.998 kb on + strand, within GFF2106 at 156.998 kb on + strand, within GFF2106 at 156.998 kb on + strand, within GFF2106 at 156.998 kb on + strand, within GFF2106 at 157.148 kb on + strand, within GFF2106 at 157.148 kb on + strand, within GFF2106 at 157.148 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.160 kb on + strand, within GFF2106 at 157.161 kb on - strand, within GFF2106 at 157.161 kb on - strand, within GFF2106 at 157.161 kb on - strand, within GFF2106 at 157.161 kb on - strand, within GFF2106 at 157.235 kb on + strand, within GFF2106 at 157.235 kb on + strand, within GFF2106 at 157.236 kb on - strand, within GFF2106 at 157.236 kb on - strand, within GFF2106 at 157.236 kb on - strand, within GFF2106 at 157.236 kb on - strand, within GFF2106 at 157.679 kb on + strand at 157.680 kb on - strand at 157.680 kb on - strand at 157.808 kb on + strand, within GFF2107 at 157.808 kb on + strand, within GFF2107 at 157.808 kb on + strand, within GFF2107 at 157.809 kb on - strand, within GFF2107 at 157.847 kb on - strand, within GFF2107 at 158.097 kb on - strand at 158.509 kb on + strand, within GFF2108 at 158.526 kb on - strand, within GFF2108 at 158.720 kb on - strand, within GFF2108 at 158.720 kb on - strand, within GFF2108
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 156,818 + GFF2106 0.22 +0.6 156,818 + GFF2106 0.22 -1.4 156,818 + GFF2106 0.22 -0.8 156,818 + GFF2106 0.22 -1.1 156,819 - GFF2106 0.22 +3.1 156,998 + GFF2106 0.37 -2.4 156,998 + GFF2106 0.37 +2.7 156,998 + GFF2106 0.37 +0.2 156,998 + GFF2106 0.37 +2.0 156,998 + GFF2106 0.37 -0.3 157,148 + GFF2106 0.50 +3.2 157,148 + GFF2106 0.50 +1.6 157,148 + GFF2106 0.50 +0.8 157,160 + GFF2106 0.51 +4.1 157,160 + GFF2106 0.51 -0.4 157,160 + GFF2106 0.51 -0.3 157,160 + GFF2106 0.51 -2.6 157,160 + GFF2106 0.51 -0.7 157,160 + GFF2106 0.51 +0.6 157,160 + GFF2106 0.51 +0.8 157,160 + GFF2106 0.51 -0.1 157,160 + GFF2106 0.51 +0.8 157,160 + GFF2106 0.51 -0.2 157,161 - GFF2106 0.51 +0.8 157,161 - GFF2106 0.51 +0.0 157,161 - GFF2106 0.51 -0.9 157,161 - GFF2106 0.51 -0.8 157,235 + GFF2106 0.58 -0.5 157,235 + GFF2106 0.58 -0.3 157,236 - GFF2106 0.58 +1.1 157,236 - GFF2106 0.58 +0.1 157,236 - GFF2106 0.58 -1.5 157,236 - GFF2106 0.58 +0.5 157,679 + +0.1 157,680 - +1.8 157,680 - -0.1 157,808 + GFF2107 0.14 +0.1 157,808 + GFF2107 0.14 -0.9 157,808 + GFF2107 0.14 -2.7 157,809 - GFF2107 0.14 +0.4 157,847 - GFF2107 0.25 -2.2 158,097 - -1.1 158,509 + GFF2108 0.39 -0.9 158,526 - GFF2108 0.41 -0.1 158,720 - GFF2108 0.60 -3.2 158,720 - GFF2108 0.60 -0.6
Or see this region's nucleotide sequence