Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF194 and GFF195 are separated by 0 nucleotides GFF195 and GFF196 are separated by 105 nucleotides GFF196 and GFF197 are separated by 26 nucleotides
GFF194 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 223,605 to 224,699
GFF194
GFF195 - RidA/YER057c/UK114 superfamily, group 1, at 224,700 to 225,191
GFF195
GFF196 - Probable ferredoxin subunit of a ring-hydroxylating dioxygenase oxidoreductase protein (EC 1.-.-.-), at 225,297 to 225,617
GFF196
GFF197 - BUG/TctC family periplasmic protein, at 225,644 to 226,612
GFF197
Position (kb) 224
225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 223.774 kb on + strand, within GFF194 at 223.775 kb on - strand, within GFF194 at 223.775 kb on - strand, within GFF194 at 223.830 kb on + strand, within GFF194 at 223.831 kb on - strand, within GFF194 at 223.831 kb on - strand, within GFF194 at 223.831 kb on - strand, within GFF194 at 223.867 kb on - strand, within GFF194 at 223.954 kb on - strand, within GFF194 at 223.977 kb on + strand, within GFF194 at 223.977 kb on + strand, within GFF194 at 224.494 kb on - strand, within GFF194 at 224.514 kb on + strand, within GFF194 at 224.515 kb on - strand, within GFF194 at 224.515 kb on - strand, within GFF194 at 224.767 kb on + strand, within GFF195 at 224.767 kb on + strand, within GFF195 at 224.767 kb on + strand, within GFF195 at 224.768 kb on - strand, within GFF195 at 225.067 kb on + strand, within GFF195 at 225.067 kb on + strand, within GFF195 at 225.067 kb on + strand, within GFF195 at 225.067 kb on + strand, within GFF195 at 225.067 kb on + strand, within GFF195 at 225.068 kb on - strand, within GFF195 at 225.068 kb on - strand, within GFF195 at 225.068 kb on - strand, within GFF195 at 225.068 kb on - strand, within GFF195 at 225.100 kb on + strand, within GFF195 at 225.100 kb on + strand, within GFF195 at 225.100 kb on + strand, within GFF195 at 225.100 kb on + strand, within GFF195 at 225.101 kb on - strand, within GFF195 at 225.101 kb on - strand, within GFF195 at 225.101 kb on - strand, within GFF195 at 225.101 kb on - strand, within GFF195 at 225.191 kb on + strand at 225.191 kb on + strand at 225.191 kb on + strand at 225.191 kb on + strand at 225.192 kb on - strand at 225.192 kb on - strand at 225.192 kb on - strand at 225.192 kb on - strand at 225.192 kb on - strand at 225.247 kb on + strand at 225.247 kb on + strand at 225.248 kb on - strand at 225.248 kb on - strand at 225.346 kb on + strand, within GFF196 at 225.479 kb on + strand, within GFF196 at 225.479 kb on + strand, within GFF196 at 225.479 kb on + strand, within GFF196 at 225.480 kb on - strand, within GFF196 at 225.520 kb on + strand, within GFF196 at 225.753 kb on + strand, within GFF197 at 225.754 kb on - strand, within GFF197 at 225.858 kb on + strand, within GFF197 at 225.858 kb on + strand, within GFF197 at 225.858 kb on + strand, within GFF197 at 225.858 kb on + strand, within GFF197 at 225.858 kb on + strand, within GFF197 at 225.859 kb on - strand, within GFF197 at 225.859 kb on - strand, within GFF197 at 225.859 kb on - strand, within GFF197 at 225.859 kb on - strand, within GFF197 at 225.859 kb on - strand, within GFF197 at 225.859 kb on - strand, within GFF197 at 226.068 kb on + strand, within GFF197 at 226.068 kb on + strand, within GFF197 at 226.068 kb on + strand, within GFF197 at 226.068 kb on + strand, within GFF197 at 226.069 kb on - strand, within GFF197
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 223,774 + GFF194 0.15 -1.0 223,775 - GFF194 0.16 -0.3 223,775 - GFF194 0.16 +0.7 223,830 + GFF194 0.21 -2.5 223,831 - GFF194 0.21 +0.1 223,831 - GFF194 0.21 -0.3 223,831 - GFF194 0.21 +1.7 223,867 - GFF194 0.24 +0.1 223,954 - GFF194 0.32 +0.0 223,977 + GFF194 0.34 -0.3 223,977 + GFF194 0.34 -0.2 224,494 - GFF194 0.81 -0.9 224,514 + GFF194 0.83 -1.6 224,515 - GFF194 0.83 -0.5 224,515 - GFF194 0.83 +0.1 224,767 + GFF195 0.14 -0.6 224,767 + GFF195 0.14 -0.7 224,767 + GFF195 0.14 -1.3 224,768 - GFF195 0.14 -1.8 225,067 + GFF195 0.75 -0.9 225,067 + GFF195 0.75 -1.0 225,067 + GFF195 0.75 -1.1 225,067 + GFF195 0.75 +1.7 225,067 + GFF195 0.75 -1.4 225,068 - GFF195 0.75 +0.0 225,068 - GFF195 0.75 -2.1 225,068 - GFF195 0.75 +0.1 225,068 - GFF195 0.75 -0.3 225,100 + GFF195 0.81 -0.5 225,100 + GFF195 0.81 -1.3 225,100 + GFF195 0.81 +0.6 225,100 + GFF195 0.81 -0.6 225,101 - GFF195 0.82 -2.4 225,101 - GFF195 0.82 -2.5 225,101 - GFF195 0.82 -0.8 225,101 - GFF195 0.82 +1.6 225,191 + +0.2 225,191 + +1.7 225,191 + -2.9 225,191 + -1.0 225,192 - -1.6 225,192 - -1.4 225,192 - -0.9 225,192 - +0.8 225,192 - -1.3 225,247 + -1.5 225,247 + +0.4 225,248 - +0.4 225,248 - +0.7 225,346 + GFF196 0.15 +0.4 225,479 + GFF196 0.57 -0.3 225,479 + GFF196 0.57 +1.5 225,479 + GFF196 0.57 +0.8 225,480 - GFF196 0.57 -1.4 225,520 + GFF196 0.69 +0.1 225,753 + GFF197 0.11 -1.6 225,754 - GFF197 0.11 -0.4 225,858 + GFF197 0.22 +0.1 225,858 + GFF197 0.22 +0.5 225,858 + GFF197 0.22 -2.5 225,858 + GFF197 0.22 +0.7 225,858 + GFF197 0.22 +0.2 225,859 - GFF197 0.22 -0.9 225,859 - GFF197 0.22 +1.2 225,859 - GFF197 0.22 -2.6 225,859 - GFF197 0.22 -2.4 225,859 - GFF197 0.22 -0.7 225,859 - GFF197 0.22 -0.5 226,068 + GFF197 0.44 -1.5 226,068 + GFF197 0.44 -1.9 226,068 + GFF197 0.44 -2.1 226,068 + GFF197 0.44 -1.6 226,069 - GFF197 0.44 -0.6
Or see this region's nucleotide sequence