Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1845 and GFF1846 are separated by 1 nucleotides GFF1846 and GFF1847 are separated by 50 nucleotides GFF1847 and GFF1848 are separated by 359 nucleotides
GFF1845 - Nucleoside ABC transporter, permease protein 1, at 516,192 to 517,343
GFF1845
GFF1846 - Nucleoside ABC transporter, permease protein 2, at 517,345 to 518,265
GFF1846
GFF1847 - Nucleoside ABC transporter, substrate-binding protein, at 518,316 to 519,491
GFF1847
GFF1848 - Proteins incorrectly called adenylate cyclase, at 519,851 to 523,891
GFF1848
Position (kb) 518
519
520 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 517.354 kb on + strand at 517.354 kb on + strand at 517.354 kb on + strand at 517.354 kb on + strand at 517.354 kb on + strand at 517.355 kb on - strand at 517.355 kb on - strand at 517.355 kb on - strand at 517.355 kb on - strand at 517.609 kb on + strand, within GFF1846 at 517.609 kb on + strand, within GFF1846 at 517.610 kb on - strand, within GFF1846 at 517.706 kb on - strand, within GFF1846 at 517.706 kb on - strand, within GFF1846 at 517.706 kb on - strand, within GFF1846 at 517.706 kb on - strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.774 kb on + strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.775 kb on - strand, within GFF1846 at 517.817 kb on - strand, within GFF1846 at 517.954 kb on + strand, within GFF1846 at 517.954 kb on + strand, within GFF1846 at 517.955 kb on - strand, within GFF1846 at 517.955 kb on - strand, within GFF1846 at 517.955 kb on - strand, within GFF1846 at 517.969 kb on + strand, within GFF1846 at 517.970 kb on - strand, within GFF1846 at 517.970 kb on - strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.074 kb on + strand, within GFF1846 at 518.075 kb on - strand, within GFF1846 at 518.075 kb on - strand, within GFF1846 at 518.075 kb on - strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.161 kb on + strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.162 kb on - strand, within GFF1846 at 518.251 kb on + strand at 518.251 kb on + strand at 518.263 kb on + strand at 518.264 kb on - strand at 518.264 kb on - strand at 518.264 kb on - strand at 518.264 kb on - strand at 518.264 kb on - strand at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.502 kb on + strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.503 kb on - strand, within GFF1847 at 518.694 kb on + strand, within GFF1847 at 518.694 kb on + strand, within GFF1847 at 518.695 kb on - strand, within GFF1847 at 518.695 kb on - strand, within GFF1847 at 518.695 kb on - strand, within GFF1847 at 518.761 kb on - strand, within GFF1847 at 518.787 kb on + strand, within GFF1847 at 518.787 kb on + strand, within GFF1847 at 518.788 kb on - strand, within GFF1847 at 518.802 kb on + strand, within GFF1847 at 518.802 kb on + strand, within GFF1847 at 518.802 kb on + strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.803 kb on - strand, within GFF1847 at 518.813 kb on + strand, within GFF1847 at 518.814 kb on + strand, within GFF1847 at 518.814 kb on + strand, within GFF1847 at 518.814 kb on + strand, within GFF1847 at 518.814 kb on + strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 518.815 kb on - strand, within GFF1847 at 519.129 kb on + strand, within GFF1847 at 519.177 kb on + strand, within GFF1847 at 519.177 kb on + strand, within GFF1847 at 519.177 kb on + strand, within GFF1847 at 519.178 kb on - strand, within GFF1847 at 519.178 kb on - strand, within GFF1847 at 519.178 kb on - strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.180 kb on + strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.181 kb on - strand, within GFF1847 at 519.444 kb on + strand at 519.444 kb on + strand at 519.444 kb on + strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.445 kb on - strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.489 kb on + strand at 519.490 kb on - strand at 519.490 kb on - strand at 519.490 kb on - strand at 519.490 kb on - strand at 519.490 kb on - strand at 519.625 kb on + strand at 519.626 kb on - strand at 519.637 kb on + strand at 519.638 kb on - strand at 519.638 kb on - strand at 519.649 kb on + strand at 519.650 kb on - strand at 519.650 kb on - strand at 519.657 kb on - strand at 519.663 kb on + strand at 519.686 kb on + strand at 519.686 kb on + strand at 519.686 kb on + strand at 519.686 kb on + strand at 519.686 kb on + strand at 519.687 kb on - strand at 519.752 kb on + strand at 519.752 kb on + strand at 519.753 kb on - strand at 519.757 kb on + strand at 519.757 kb on + strand at 519.758 kb on - strand at 519.758 kb on - strand at 519.971 kb on + strand at 519.971 kb on + strand at 520.142 kb on + strand at 520.142 kb on + strand at 520.142 kb on + strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.158 kb on - strand at 520.429 kb on - strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.442 kb on + strand, within GFF1848 at 520.443 kb on - strand, within GFF1848 at 520.443 kb on - strand, within GFF1848 at 520.443 kb on - strand, within GFF1848 at 520.443 kb on - strand, within GFF1848 at 520.443 kb on - strand, within GFF1848
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 517,354 + -2.3 517,354 + -0.8 517,354 + -0.3 517,354 + -3.7 517,354 + +0.6 517,355 - -1.9 517,355 - +0.6 517,355 - +0.7 517,355 - -1.5 517,609 + GFF1846 0.29 -0.1 517,609 + GFF1846 0.29 +0.3 517,610 - GFF1846 0.29 -3.2 517,706 - GFF1846 0.39 +2.6 517,706 - GFF1846 0.39 -0.5 517,706 - GFF1846 0.39 +0.5 517,706 - GFF1846 0.39 -1.5 517,774 + GFF1846 0.47 -2.6 517,774 + GFF1846 0.47 +0.4 517,774 + GFF1846 0.47 -0.9 517,774 + GFF1846 0.47 -1.0 517,774 + GFF1846 0.47 +1.2 517,774 + GFF1846 0.47 -0.5 517,774 + GFF1846 0.47 -0.2 517,774 + GFF1846 0.47 -1.8 517,774 + GFF1846 0.47 -4.4 517,774 + GFF1846 0.47 +2.2 517,774 + GFF1846 0.47 -0.3 517,774 + GFF1846 0.47 -0.1 517,775 - GFF1846 0.47 -0.9 517,775 - GFF1846 0.47 -2.0 517,775 - GFF1846 0.47 -1.3 517,775 - GFF1846 0.47 -0.4 517,775 - GFF1846 0.47 -1.8 517,775 - GFF1846 0.47 -0.0 517,775 - GFF1846 0.47 +1.9 517,775 - GFF1846 0.47 -0.0 517,775 - GFF1846 0.47 -1.8 517,775 - GFF1846 0.47 -2.0 517,817 - GFF1846 0.51 -0.7 517,954 + GFF1846 0.66 -1.1 517,954 + GFF1846 0.66 -0.6 517,955 - GFF1846 0.66 +0.3 517,955 - GFF1846 0.66 -4.0 517,955 - GFF1846 0.66 -0.3 517,969 + GFF1846 0.68 +0.6 517,970 - GFF1846 0.68 -1.2 517,970 - GFF1846 0.68 -2.2 518,074 + GFF1846 0.79 +0.2 518,074 + GFF1846 0.79 -1.6 518,074 + GFF1846 0.79 +0.2 518,074 + GFF1846 0.79 -1.7 518,074 + GFF1846 0.79 -0.8 518,075 - GFF1846 0.79 -0.5 518,075 - GFF1846 0.79 -0.1 518,075 - GFF1846 0.79 -0.3 518,161 + GFF1846 0.89 -2.0 518,161 + GFF1846 0.89 -0.9 518,161 + GFF1846 0.89 +0.4 518,161 + GFF1846 0.89 -2.7 518,161 + GFF1846 0.89 +0.6 518,161 + GFF1846 0.89 +0.0 518,161 + GFF1846 0.89 -0.3 518,162 - GFF1846 0.89 -1.9 518,162 - GFF1846 0.89 -0.9 518,162 - GFF1846 0.89 -0.6 518,162 - GFF1846 0.89 -3.2 518,162 - GFF1846 0.89 -1.7 518,162 - GFF1846 0.89 -1.5 518,162 - GFF1846 0.89 -2.0 518,162 - GFF1846 0.89 -1.9 518,251 + -2.4 518,251 + -1.9 518,263 + -1.6 518,264 - -1.8 518,264 - +0.1 518,264 - +1.6 518,264 - -0.8 518,264 - -2.0 518,502 + GFF1847 0.16 -0.3 518,502 + GFF1847 0.16 +0.9 518,502 + GFF1847 0.16 -0.1 518,502 + GFF1847 0.16 -0.0 518,502 + GFF1847 0.16 -0.6 518,502 + GFF1847 0.16 +0.7 518,503 - GFF1847 0.16 -3.8 518,503 - GFF1847 0.16 -2.9 518,503 - GFF1847 0.16 -0.1 518,503 - GFF1847 0.16 -1.1 518,503 - GFF1847 0.16 -1.4 518,503 - GFF1847 0.16 -0.5 518,694 + GFF1847 0.32 +1.6 518,694 + GFF1847 0.32 +0.7 518,695 - GFF1847 0.32 -0.8 518,695 - GFF1847 0.32 -1.3 518,695 - GFF1847 0.32 -0.6 518,761 - GFF1847 0.38 -0.3 518,787 + GFF1847 0.40 +0.9 518,787 + GFF1847 0.40 -2.4 518,788 - GFF1847 0.40 +1.2 518,802 + GFF1847 0.41 -0.6 518,802 + GFF1847 0.41 -2.4 518,802 + GFF1847 0.41 -1.6 518,803 - GFF1847 0.41 +0.2 518,803 - GFF1847 0.41 -2.8 518,803 - GFF1847 0.41 +0.3 518,803 - GFF1847 0.41 +1.0 518,803 - GFF1847 0.41 -1.1 518,803 - GFF1847 0.41 -0.2 518,813 + GFF1847 0.42 +1.8 518,814 + GFF1847 0.42 -1.7 518,814 + GFF1847 0.42 -0.2 518,814 + GFF1847 0.42 -0.2 518,814 + GFF1847 0.42 -1.5 518,815 - GFF1847 0.42 +0.0 518,815 - GFF1847 0.42 -1.3 518,815 - GFF1847 0.42 -0.1 518,815 - GFF1847 0.42 +2.2 518,815 - GFF1847 0.42 -1.4 518,815 - GFF1847 0.42 +0.5 518,815 - GFF1847 0.42 +1.1 518,815 - GFF1847 0.42 +1.6 518,815 - GFF1847 0.42 +0.3 518,815 - GFF1847 0.42 -2.8 518,815 - GFF1847 0.42 -2.2 518,815 - GFF1847 0.42 -1.9 518,815 - GFF1847 0.42 -0.0 519,129 + GFF1847 0.69 -0.1 519,177 + GFF1847 0.73 -2.1 519,177 + GFF1847 0.73 -1.0 519,177 + GFF1847 0.73 -1.2 519,178 - GFF1847 0.73 -0.6 519,178 - GFF1847 0.73 +1.5 519,178 - GFF1847 0.73 -0.9 519,180 + GFF1847 0.73 +1.3 519,180 + GFF1847 0.73 -0.0 519,180 + GFF1847 0.73 +0.0 519,180 + GFF1847 0.73 +0.3 519,180 + GFF1847 0.73 +0.1 519,181 - GFF1847 0.74 -2.3 519,181 - GFF1847 0.74 -0.1 519,181 - GFF1847 0.74 -1.6 519,181 - GFF1847 0.74 +2.5 519,181 - GFF1847 0.74 +1.4 519,181 - GFF1847 0.74 -1.7 519,181 - GFF1847 0.74 -0.9 519,181 - GFF1847 0.74 -1.1 519,181 - GFF1847 0.74 +0.4 519,181 - GFF1847 0.74 +1.5 519,181 - GFF1847 0.74 -0.7 519,181 - GFF1847 0.74 -0.6 519,181 - GFF1847 0.74 -1.2 519,444 + -1.9 519,444 + -2.3 519,444 + -0.3 519,445 - -0.6 519,445 - -0.3 519,445 - -0.3 519,445 - -1.9 519,445 - +1.0 519,445 - +2.2 519,445 - -1.6 519,489 + +0.2 519,489 + -1.2 519,489 + +0.2 519,489 + +1.2 519,489 + -0.7 519,489 + +0.2 519,489 + -0.6 519,489 + -0.8 519,489 + -3.1 519,489 + -0.3 519,489 + -3.6 519,489 + -1.5 519,490 - -0.3 519,490 - -2.1 519,490 - -0.8 519,490 - -0.5 519,490 - -0.5 519,625 + +1.2 519,626 - +0.5 519,637 + -0.4 519,638 - -2.0 519,638 - -2.4 519,649 + -0.5 519,650 - +0.4 519,650 - +0.7 519,657 - +0.0 519,663 + +1.9 519,686 + -2.2 519,686 + -2.9 519,686 + -0.4 519,686 + +0.1 519,686 + -0.9 519,687 - +0.4 519,752 + -1.7 519,752 + +0.3 519,753 - -1.7 519,757 + +0.1 519,757 + -0.1 519,758 - -0.5 519,758 - +2.2 519,971 + -1.2 519,971 + -1.1 520,142 + -1.5 520,142 + +2.4 520,142 + +1.2 520,158 - +0.2 520,158 - -1.0 520,158 - +0.3 520,158 - -0.2 520,158 - -3.0 520,158 - -1.8 520,429 - GFF1848 0.14 -1.0 520,442 + GFF1848 0.15 +0.3 520,442 + GFF1848 0.15 +2.1 520,442 + GFF1848 0.15 -2.9 520,442 + GFF1848 0.15 +3.5 520,442 + GFF1848 0.15 +4.0 520,442 + GFF1848 0.15 +2.2 520,443 - GFF1848 0.15 -1.7 520,443 - GFF1848 0.15 +0.7 520,443 - GFF1848 0.15 -0.8 520,443 - GFF1848 0.15 +1.2 520,443 - GFF1848 0.15 -0.6
Or see this region's nucleotide sequence