Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1674 and GFF1675 overlap by 8 nucleotides GFF1675 and GFF1676 overlap by 4 nucleotides GFF1676 and GFF1677 are separated by 36 nucleotides
GFF1674 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 319,563 to 320,324
GFF1674
GFF1675 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 320,317 to 321,297
GFF1675
GFF1676 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 321,294 to 322,166
GFF1676
GFF1677 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 322,203 to 323,405
GFF1677
Position (kb) 321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 320.423 kb on + strand, within GFF1675 at 320.423 kb on + strand, within GFF1675 at 320.423 kb on + strand, within GFF1675 at 320.423 kb on + strand, within GFF1675 at 320.423 kb on + strand, within GFF1675 at 320.597 kb on - strand, within GFF1675 at 320.601 kb on - strand, within GFF1675 at 320.601 kb on - strand, within GFF1675 at 320.618 kb on + strand, within GFF1675 at 320.618 kb on + strand, within GFF1675 at 320.618 kb on + strand, within GFF1675 at 320.619 kb on - strand, within GFF1675 at 320.619 kb on - strand, within GFF1675 at 321.089 kb on + strand, within GFF1675 at 321.090 kb on - strand, within GFF1675 at 321.090 kb on - strand, within GFF1675 at 321.090 kb on - strand, within GFF1675 at 321.182 kb on + strand, within GFF1675 at 321.183 kb on - strand, within GFF1675 at 321.183 kb on - strand, within GFF1675 at 321.523 kb on + strand, within GFF1676 at 321.523 kb on + strand, within GFF1676 at 321.524 kb on - strand, within GFF1676 at 321.526 kb on + strand, within GFF1676 at 321.526 kb on + strand, within GFF1676 at 321.592 kb on + strand, within GFF1676 at 321.928 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.974 kb on - strand, within GFF1676 at 322.007 kb on - strand, within GFF1676 at 322.072 kb on + strand, within GFF1676 at 322.072 kb on + strand, within GFF1676 at 322.073 kb on - strand, within GFF1676 at 322.096 kb on - strand at 322.105 kb on + strand at 322.105 kb on + strand at 322.161 kb on + strand at 322.161 kb on + strand at 322.161 kb on + strand at 322.161 kb on + strand at 322.162 kb on - strand at 322.339 kb on + strand, within GFF1677 at 322.450 kb on + strand, within GFF1677 at 322.450 kb on + strand, within GFF1677 at 322.450 kb on + strand, within GFF1677 at 322.451 kb on - strand, within GFF1677 at 322.597 kb on + strand, within GFF1677 at 322.597 kb on + strand, within GFF1677 at 322.691 kb on - strand, within GFF1677 at 322.691 kb on - strand, within GFF1677 at 322.693 kb on + strand, within GFF1677 at 322.694 kb on - strand, within GFF1677 at 322.694 kb on - strand, within GFF1677 at 322.952 kb on - strand, within GFF1677 at 323.038 kb on + strand, within GFF1677
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 320,423 + GFF1675 0.11 +0.7 320,423 + GFF1675 0.11 -3.0 320,423 + GFF1675 0.11 -1.4 320,423 + GFF1675 0.11 -0.8 320,423 + GFF1675 0.11 -3.0 320,597 - GFF1675 0.29 -0.0 320,601 - GFF1675 0.29 +0.2 320,601 - GFF1675 0.29 -0.4 320,618 + GFF1675 0.31 +0.0 320,618 + GFF1675 0.31 -0.9 320,618 + GFF1675 0.31 -1.1 320,619 - GFF1675 0.31 +0.0 320,619 - GFF1675 0.31 -3.5 321,089 + GFF1675 0.79 -0.1 321,090 - GFF1675 0.79 +1.3 321,090 - GFF1675 0.79 -1.3 321,090 - GFF1675 0.79 +0.3 321,182 + GFF1675 0.88 -1.9 321,183 - GFF1675 0.88 +0.0 321,183 - GFF1675 0.88 -1.1 321,523 + GFF1676 0.26 +1.6 321,523 + GFF1676 0.26 -0.9 321,524 - GFF1676 0.26 -1.4 321,526 + GFF1676 0.27 -1.3 321,526 + GFF1676 0.27 +1.0 321,592 + GFF1676 0.34 +0.4 321,928 + GFF1676 0.73 -1.9 321,973 + GFF1676 0.78 +0.0 321,973 + GFF1676 0.78 +1.2 321,973 + GFF1676 0.78 -1.0 321,973 + GFF1676 0.78 -0.1 321,973 + GFF1676 0.78 -0.2 321,974 - GFF1676 0.78 -1.7 322,007 - GFF1676 0.82 +1.4 322,072 + GFF1676 0.89 -1.4 322,072 + GFF1676 0.89 -1.1 322,073 - GFF1676 0.89 +0.7 322,096 - +0.0 322,105 + +1.8 322,105 + -3.0 322,161 + +1.4 322,161 + +2.1 322,161 + -1.6 322,161 + -1.8 322,162 - +0.7 322,339 + GFF1677 0.11 -1.2 322,450 + GFF1677 0.21 -2.0 322,450 + GFF1677 0.21 +0.4 322,450 + GFF1677 0.21 -0.0 322,451 - GFF1677 0.21 -3.6 322,597 + GFF1677 0.33 -2.0 322,597 + GFF1677 0.33 -0.8 322,691 - GFF1677 0.41 -1.4 322,691 - GFF1677 0.41 +0.9 322,693 + GFF1677 0.41 -1.8 322,694 - GFF1677 0.41 -0.8 322,694 - GFF1677 0.41 +2.5 322,952 - GFF1677 0.62 +0.2 323,038 + GFF1677 0.69 +1.6
Or see this region's nucleotide sequence