Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1657 and GFF1658 are separated by 91 nucleotides GFF1658 and GFF1659 overlap by 4 nucleotides
GFF1657 - Nitronate monooxygenase (EC 1.13.12.16), at 298,998 to 300,119
GFF1657
GFF1658 - Transcriptional regulator, LysR family, at 300,211 to 301,086
GFF1658
GFF1659 - Uncharacterized MFS-type transporter, at 301,083 to 302,249
GFF1659
Position (kb) 300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 299.788 kb on + strand, within GFF1657 at 299.788 kb on + strand, within GFF1657 at 299.788 kb on + strand, within GFF1657 at 299.788 kb on + strand, within GFF1657 at 299.788 kb on + strand, within GFF1657 at 299.788 kb on + strand, within GFF1657 at 299.788 kb on + strand, within GFF1657 at 299.788 kb on + strand, within GFF1657 at 299.789 kb on - strand, within GFF1657 at 299.789 kb on - strand, within GFF1657 at 299.789 kb on - strand, within GFF1657 at 299.789 kb on - strand, within GFF1657 at 300.138 kb on + strand at 300.139 kb on - strand at 300.183 kb on + strand at 300.409 kb on + strand, within GFF1658 at 300.553 kb on + strand, within GFF1658 at 300.814 kb on + strand, within GFF1658 at 301.030 kb on + strand at 301.030 kb on + strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.031 kb on - strand at 301.254 kb on + strand, within GFF1659 at 301.254 kb on + strand, within GFF1659 at 301.254 kb on + strand, within GFF1659 at 301.254 kb on + strand, within GFF1659 at 301.272 kb on + strand, within GFF1659 at 301.272 kb on + strand, within GFF1659 at 301.272 kb on + strand, within GFF1659 at 301.273 kb on - strand, within GFF1659 at 301.273 kb on - strand, within GFF1659 at 301.273 kb on - strand, within GFF1659 at 301.281 kb on + strand, within GFF1659 at 301.281 kb on + strand, within GFF1659 at 301.282 kb on - strand, within GFF1659 at 301.282 kb on - strand, within GFF1659 at 301.753 kb on - strand, within GFF1659 at 301.753 kb on - strand, within GFF1659 at 301.773 kb on + strand, within GFF1659 at 301.773 kb on + strand, within GFF1659 at 301.773 kb on + strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.774 kb on - strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.791 kb on + strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.792 kb on - strand, within GFF1659 at 301.995 kb on + strand, within GFF1659 at 301.995 kb on + strand, within GFF1659
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 299,788 + GFF1657 0.70 +1.1 299,788 + GFF1657 0.70 -1.8 299,788 + GFF1657 0.70 -1.8 299,788 + GFF1657 0.70 +1.8 299,788 + GFF1657 0.70 +0.7 299,788 + GFF1657 0.70 -0.3 299,788 + GFF1657 0.70 -0.8 299,788 + GFF1657 0.70 -1.3 299,789 - GFF1657 0.70 -0.2 299,789 - GFF1657 0.70 -1.7 299,789 - GFF1657 0.70 +0.7 299,789 - GFF1657 0.70 -0.7 300,138 + +2.4 300,139 - -1.0 300,183 + -0.3 300,409 + GFF1658 0.23 +2.2 300,553 + GFF1658 0.39 +0.9 300,814 + GFF1658 0.69 -0.9 301,030 + -0.4 301,030 + -0.7 301,031 - -0.5 301,031 - +0.8 301,031 - +2.0 301,031 - -0.9 301,031 - -2.5 301,031 - +0.3 301,254 + GFF1659 0.15 +1.7 301,254 + GFF1659 0.15 -1.3 301,254 + GFF1659 0.15 -1.7 301,254 + GFF1659 0.15 +3.2 301,272 + GFF1659 0.16 +1.3 301,272 + GFF1659 0.16 -1.7 301,272 + GFF1659 0.16 -1.9 301,273 - GFF1659 0.16 +1.7 301,273 - GFF1659 0.16 -0.9 301,273 - GFF1659 0.16 +0.6 301,281 + GFF1659 0.17 -2.1 301,281 + GFF1659 0.17 -1.5 301,282 - GFF1659 0.17 -0.5 301,282 - GFF1659 0.17 -1.8 301,753 - GFF1659 0.57 +0.2 301,753 - GFF1659 0.57 -0.3 301,773 + GFF1659 0.59 +0.2 301,773 + GFF1659 0.59 -1.4 301,773 + GFF1659 0.59 +2.7 301,774 - GFF1659 0.59 -0.3 301,774 - GFF1659 0.59 -0.7 301,774 - GFF1659 0.59 -0.8 301,774 - GFF1659 0.59 +0.7 301,774 - GFF1659 0.59 -0.1 301,791 + GFF1659 0.61 -1.9 301,791 + GFF1659 0.61 -1.9 301,791 + GFF1659 0.61 -0.7 301,791 + GFF1659 0.61 -2.6 301,791 + GFF1659 0.61 +1.3 301,792 - GFF1659 0.61 -0.1 301,792 - GFF1659 0.61 +1.7 301,792 - GFF1659 0.61 -1.9 301,792 - GFF1659 0.61 +2.0 301,792 - GFF1659 0.61 -0.9 301,792 - GFF1659 0.61 -1.6 301,995 + GFF1659 0.78 -2.5 301,995 + GFF1659 0.78 -3.2
Or see this region's nucleotide sequence