Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1618 and GFF1619 are separated by 25 nucleotides GFF1619 and GFF1620 are separated by 13 nucleotides GFF1620 and GFF1621 are separated by 204 nucleotides
GFF1618 - Phospholipase C (EC 3.1.4.3), at 215,653 to 217,803
GFF1618
GFF1619 - no description, at 217,829 to 218,071
GFF1619
GFF1620 - Large exoproteins involved in heme utilization or adhesion, at 218,085 to 220,358
GFF1620
GFF1621 - Phosphonoacetaldehyde dehydrogenase (NAD+), at 220,563 to 222,011
GFF1621
Position (kb) 218
219
220
221 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 217.122 kb on - strand, within GFF1618 at 217.314 kb on - strand, within GFF1618 at 217.379 kb on + strand, within GFF1618 at 218.194 kb on + strand at 218.194 kb on + strand at 218.195 kb on - strand at 218.198 kb on + strand at 218.198 kb on + strand at 218.199 kb on - strand at 218.199 kb on - strand at 218.392 kb on + strand, within GFF1620 at 218.392 kb on + strand, within GFF1620 at 218.392 kb on + strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.393 kb on - strand, within GFF1620 at 218.513 kb on + strand, within GFF1620 at 218.590 kb on + strand, within GFF1620 at 218.590 kb on + strand, within GFF1620 at 218.590 kb on + strand, within GFF1620 at 218.590 kb on + strand, within GFF1620 at 218.591 kb on - strand, within GFF1620 at 218.591 kb on - strand, within GFF1620 at 218.591 kb on - strand, within GFF1620 at 218.591 kb on - strand, within GFF1620 at 218.591 kb on - strand, within GFF1620 at 218.591 kb on - strand, within GFF1620 at 218.591 kb on - strand, within GFF1620 at 218.893 kb on + strand, within GFF1620 at 218.893 kb on + strand, within GFF1620 at 218.894 kb on - strand, within GFF1620 at 218.894 kb on - strand, within GFF1620 at 218.894 kb on - strand, within GFF1620 at 218.894 kb on - strand, within GFF1620 at 218.944 kb on + strand, within GFF1620 at 218.945 kb on - strand, within GFF1620 at 219.008 kb on + strand, within GFF1620 at 219.009 kb on - strand, within GFF1620 at 219.010 kb on + strand, within GFF1620 at 219.011 kb on - strand, within GFF1620 at 219.023 kb on - strand, within GFF1620 at 219.023 kb on - strand, within GFF1620 at 219.068 kb on - strand, within GFF1620 at 219.283 kb on + strand, within GFF1620 at 219.323 kb on - strand, within GFF1620 at 219.329 kb on - strand, within GFF1620 at 219.329 kb on - strand, within GFF1620 at 219.967 kb on + strand, within GFF1620 at 219.968 kb on - strand, within GFF1620 at 220.044 kb on - strand, within GFF1620 at 220.744 kb on + strand, within GFF1621 at 220.744 kb on + strand, within GFF1621 at 220.784 kb on - strand, within GFF1621 at 221.164 kb on + strand, within GFF1621 at 221.164 kb on + strand, within GFF1621 at 221.263 kb on + strand, within GFF1621
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 217,122 - GFF1618 0.68 +1.7 217,314 - GFF1618 0.77 -0.9 217,379 + GFF1618 0.80 +1.0 218,194 + -1.4 218,194 + -0.3 218,195 - -1.0 218,198 + +0.3 218,198 + +0.3 218,199 - -0.3 218,199 - +1.0 218,392 + GFF1620 0.14 -1.6 218,392 + GFF1620 0.14 -1.2 218,392 + GFF1620 0.14 -2.7 218,393 - GFF1620 0.14 -0.4 218,393 - GFF1620 0.14 -1.9 218,393 - GFF1620 0.14 +0.7 218,393 - GFF1620 0.14 -1.0 218,393 - GFF1620 0.14 +1.0 218,393 - GFF1620 0.14 +2.5 218,393 - GFF1620 0.14 -0.5 218,393 - GFF1620 0.14 -0.8 218,393 - GFF1620 0.14 +0.0 218,393 - GFF1620 0.14 -2.6 218,513 + GFF1620 0.19 -3.3 218,590 + GFF1620 0.22 -1.2 218,590 + GFF1620 0.22 -0.0 218,590 + GFF1620 0.22 -1.2 218,590 + GFF1620 0.22 -4.2 218,591 - GFF1620 0.22 +0.7 218,591 - GFF1620 0.22 -1.8 218,591 - GFF1620 0.22 -0.9 218,591 - GFF1620 0.22 +0.9 218,591 - GFF1620 0.22 +0.0 218,591 - GFF1620 0.22 -1.2 218,591 - GFF1620 0.22 -0.5 218,893 + GFF1620 0.36 +0.3 218,893 + GFF1620 0.36 -1.1 218,894 - GFF1620 0.36 +0.1 218,894 - GFF1620 0.36 +1.3 218,894 - GFF1620 0.36 +0.3 218,894 - GFF1620 0.36 -0.3 218,944 + GFF1620 0.38 -1.6 218,945 - GFF1620 0.38 -1.5 219,008 + GFF1620 0.41 -3.0 219,009 - GFF1620 0.41 -3.9 219,010 + GFF1620 0.41 -0.0 219,011 - GFF1620 0.41 +2.3 219,023 - GFF1620 0.41 +0.2 219,023 - GFF1620 0.41 +1.0 219,068 - GFF1620 0.43 -2.0 219,283 + GFF1620 0.53 +0.2 219,323 - GFF1620 0.54 +1.4 219,329 - GFF1620 0.55 +1.8 219,329 - GFF1620 0.55 -1.5 219,967 + GFF1620 0.83 +1.0 219,968 - GFF1620 0.83 -1.4 220,044 - GFF1620 0.86 -0.0 220,744 + GFF1621 0.12 +0.5 220,744 + GFF1621 0.12 +0.5 220,784 - GFF1621 0.15 -2.2 221,164 + GFF1621 0.41 -0.3 221,164 + GFF1621 0.41 -0.1 221,263 + GFF1621 0.48 +1.3
Or see this region's nucleotide sequence