Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1610 and GFF1611 are separated by 5 nucleotides GFF1611 and GFF1612 are separated by 6 nucleotides GFF1612 and GFF1613 are separated by 43 nucleotides GFF1613 and GFF1614 are separated by 2 nucleotides
GFF1610 - Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 208,993 to 210,459
GFF1610
GFF1611 - no description, at 210,465 to 210,812
GFF1611
GFF1612 - no description, at 210,819 to 211,112
GFF1612
GFF1613 - Phosphonate ABC transporter permease protein PhnE (TC 3.A.1.9.1), at 211,156 to 211,980
GFF1613
GFF1614 - Phosphonate ABC transporter ATP-binding protein PhnC (TC 3.A.1.9.1), at 211,983 to 212,783
GFF1614
Position (kb) 210
211
212 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 209.884 kb on + strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.885 kb on - strand, within GFF1610 at 209.885 kb on - strand, within GFF1610 at 209.885 kb on - strand, within GFF1610 at 209.903 kb on - strand, within GFF1610 at 209.903 kb on - strand, within GFF1610 at 209.903 kb on - strand, within GFF1610 at 209.903 kb on - strand, within GFF1610 at 210.247 kb on + strand, within GFF1610 at 210.247 kb on + strand, within GFF1610 at 210.247 kb on + strand, within GFF1610 at 210.247 kb on + strand, within GFF1610 at 210.247 kb on + strand, within GFF1610 at 210.247 kb on + strand, within GFF1610 at 210.248 kb on - strand, within GFF1610 at 210.458 kb on - strand at 210.487 kb on + strand at 210.488 kb on - strand at 210.494 kb on - strand at 210.494 kb on - strand at 210.533 kb on + strand, within GFF1611 at 210.533 kb on + strand, within GFF1611 at 210.533 kb on + strand, within GFF1611 at 210.534 kb on - strand, within GFF1611 at 210.534 kb on - strand, within GFF1611 at 210.534 kb on - strand, within GFF1611 at 210.542 kb on + strand, within GFF1611 at 210.548 kb on + strand, within GFF1611 at 210.747 kb on + strand, within GFF1611 at 210.747 kb on + strand, within GFF1611 at 210.747 kb on + strand, within GFF1611 at 210.747 kb on + strand, within GFF1611 at 210.747 kb on + strand, within GFF1611 at 210.747 kb on + strand, within GFF1611 at 210.748 kb on - strand, within GFF1611 at 210.748 kb on - strand, within GFF1611 at 210.748 kb on - strand, within GFF1611 at 210.748 kb on - strand, within GFF1611 at 210.748 kb on - strand, within GFF1611 at 210.748 kb on - strand, within GFF1611 at 210.926 kb on + strand, within GFF1612 at 210.926 kb on + strand, within GFF1612 at 210.927 kb on - strand, within GFF1612 at 210.927 kb on - strand, within GFF1612 at 210.943 kb on + strand, within GFF1612 at 210.943 kb on + strand, within GFF1612 at 210.943 kb on + strand, within GFF1612 at 210.944 kb on - strand, within GFF1612 at 210.944 kb on - strand, within GFF1612 at 211.023 kb on + strand, within GFF1612 at 211.024 kb on - strand, within GFF1612 at 211.024 kb on - strand, within GFF1612 at 211.024 kb on - strand, within GFF1612 at 211.024 kb on - strand, within GFF1612 at 211.024 kb on - strand, within GFF1612 at 211.033 kb on + strand, within GFF1612 at 211.033 kb on + strand, within GFF1612 at 211.034 kb on - strand, within GFF1612 at 211.034 kb on - strand, within GFF1612 at 211.034 kb on - strand, within GFF1612 at 211.034 kb on - strand, within GFF1612 at 211.034 kb on - strand, within GFF1612 at 211.035 kb on + strand, within GFF1612 at 211.035 kb on + strand, within GFF1612 at 211.036 kb on - strand, within GFF1612 at 211.041 kb on + strand, within GFF1612 at 211.041 kb on + strand, within GFF1612 at 211.042 kb on - strand, within GFF1612 at 211.042 kb on - strand, within GFF1612 at 211.231 kb on - strand at 211.236 kb on + strand at 211.237 kb on - strand at 211.361 kb on + strand, within GFF1613 at 211.640 kb on + strand, within GFF1613 at 211.640 kb on + strand, within GFF1613 at 211.641 kb on - strand, within GFF1613 at 211.641 kb on - strand, within GFF1613 at 211.641 kb on - strand, within GFF1613 at 211.641 kb on - strand, within GFF1613 at 211.958 kb on + strand at 212.069 kb on - strand, within GFF1614 at 212.069 kb on - strand, within GFF1614 at 212.069 kb on - strand, within GFF1614 at 212.069 kb on - strand, within GFF1614
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 209,884 + GFF1610 0.61 -1.4 209,884 + GFF1610 0.61 +1.5 209,884 + GFF1610 0.61 -0.5 209,884 + GFF1610 0.61 +1.6 209,884 + GFF1610 0.61 -0.2 209,884 + GFF1610 0.61 -1.9 209,884 + GFF1610 0.61 +1.3 209,884 + GFF1610 0.61 +0.1 209,885 - GFF1610 0.61 +0.1 209,885 - GFF1610 0.61 +1.3 209,885 - GFF1610 0.61 +0.1 209,903 - GFF1610 0.62 -1.3 209,903 - GFF1610 0.62 -2.0 209,903 - GFF1610 0.62 +2.1 209,903 - GFF1610 0.62 -2.4 210,247 + GFF1610 0.85 -2.6 210,247 + GFF1610 0.85 -0.3 210,247 + GFF1610 0.85 -2.0 210,247 + GFF1610 0.85 -3.0 210,247 + GFF1610 0.85 +0.3 210,247 + GFF1610 0.85 -2.6 210,248 - GFF1610 0.86 -1.7 210,458 - +0.8 210,487 + +0.8 210,488 - -3.2 210,494 - +0.5 210,494 - -0.8 210,533 + GFF1611 0.20 -2.0 210,533 + GFF1611 0.20 +1.3 210,533 + GFF1611 0.20 -3.5 210,534 - GFF1611 0.20 -0.4 210,534 - GFF1611 0.20 -1.9 210,534 - GFF1611 0.20 -2.5 210,542 + GFF1611 0.22 -1.8 210,548 + GFF1611 0.24 -0.7 210,747 + GFF1611 0.81 -0.9 210,747 + GFF1611 0.81 +0.7 210,747 + GFF1611 0.81 -1.9 210,747 + GFF1611 0.81 +0.7 210,747 + GFF1611 0.81 -1.5 210,747 + GFF1611 0.81 +0.3 210,748 - GFF1611 0.81 -1.3 210,748 - GFF1611 0.81 -0.9 210,748 - GFF1611 0.81 +2.3 210,748 - GFF1611 0.81 -0.7 210,748 - GFF1611 0.81 -2.7 210,748 - GFF1611 0.81 -0.4 210,926 + GFF1612 0.36 +0.9 210,926 + GFF1612 0.36 -1.3 210,927 - GFF1612 0.37 -1.2 210,927 - GFF1612 0.37 -0.2 210,943 + GFF1612 0.42 -2.0 210,943 + GFF1612 0.42 -3.3 210,943 + GFF1612 0.42 -0.3 210,944 - GFF1612 0.43 +0.5 210,944 - GFF1612 0.43 -1.7 211,023 + GFF1612 0.69 +1.3 211,024 - GFF1612 0.70 -0.1 211,024 - GFF1612 0.70 -0.3 211,024 - GFF1612 0.70 -1.9 211,024 - GFF1612 0.70 -2.1 211,024 - GFF1612 0.70 +0.3 211,033 + GFF1612 0.73 +0.1 211,033 + GFF1612 0.73 -1.4 211,034 - GFF1612 0.73 +2.0 211,034 - GFF1612 0.73 -1.7 211,034 - GFF1612 0.73 +0.7 211,034 - GFF1612 0.73 -1.9 211,034 - GFF1612 0.73 -1.2 211,035 + GFF1612 0.73 -0.2 211,035 + GFF1612 0.73 -2.3 211,036 - GFF1612 0.74 -1.2 211,041 + GFF1612 0.76 -2.6 211,041 + GFF1612 0.76 -2.4 211,042 - GFF1612 0.76 -1.4 211,042 - GFF1612 0.76 -1.3 211,231 - +1.6 211,236 + -0.7 211,237 - -3.9 211,361 + GFF1613 0.25 -1.8 211,640 + GFF1613 0.59 -0.2 211,640 + GFF1613 0.59 -2.3 211,641 - GFF1613 0.59 +1.1 211,641 - GFF1613 0.59 +0.3 211,641 - GFF1613 0.59 -0.0 211,641 - GFF1613 0.59 -0.3 211,958 + -0.0 212,069 - GFF1614 0.11 -2.1 212,069 - GFF1614 0.11 -2.5 212,069 - GFF1614 0.11 -1.0 212,069 - GFF1614 0.11 -2.0
Or see this region's nucleotide sequence