Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF157 and GFF158 overlap by 4 nucleotides GFF158 and GFF159 overlap by 13 nucleotides GFF159 and GFF160 are separated by 103 nucleotides GFF160 and GFF161 are separated by 2 nucleotides
GFF157 - Methyltransferase type 12, at 185,495 to 186,100
GFF157
GFF158 - LmbE-like protein, at 186,097 to 186,858
GFF158
GFF159 - Acyl-CoA dehydrogenase/oxidase domain protein, at 186,846 to 187,865
GFF159
GFF160 - hypothetical protein, at 187,969 to 188,559
GFF160
GFF161 - hypothetical protein, at 188,562 to 189,185
GFF161
Position (kb) 186
187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 185.958 kb on + strand, within GFF157 at 185.958 kb on + strand, within GFF157 at 185.959 kb on - strand, within GFF157 at 185.971 kb on - strand, within GFF157 at 185.971 kb on - strand, within GFF157 at 186.021 kb on + strand, within GFF157 at 186.022 kb on - strand, within GFF157 at 186.042 kb on + strand at 186.043 kb on - strand at 186.043 kb on - strand at 186.063 kb on + strand at 186.063 kb on + strand at 186.063 kb on + strand at 186.063 kb on + strand at 186.064 kb on - strand at 186.064 kb on - strand at 186.064 kb on - strand at 186.078 kb on + strand at 186.078 kb on + strand at 186.116 kb on + strand at 186.116 kb on + strand at 186.117 kb on - strand at 186.117 kb on - strand at 186.117 kb on - strand at 186.117 kb on - strand at 186.847 kb on + strand at 186.848 kb on - strand at 186.848 kb on - strand at 187.163 kb on + strand, within GFF159 at 187.163 kb on + strand, within GFF159 at 187.163 kb on + strand, within GFF159 at 187.163 kb on + strand, within GFF159 at 187.163 kb on + strand, within GFF159 at 187.163 kb on + strand, within GFF159 at 187.164 kb on - strand, within GFF159 at 187.303 kb on + strand, within GFF159 at 187.303 kb on + strand, within GFF159 at 187.303 kb on + strand, within GFF159 at 187.303 kb on + strand, within GFF159 at 187.304 kb on - strand, within GFF159 at 187.304 kb on - strand, within GFF159 at 187.304 kb on - strand, within GFF159 at 187.304 kb on - strand, within GFF159 at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.839 kb on + strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.840 kb on - strand at 187.877 kb on - strand at 187.924 kb on + strand at 187.924 kb on + strand at 187.925 kb on - strand at 187.925 kb on - strand at 187.925 kb on - strand at 187.925 kb on - strand at 187.925 kb on - strand at 187.925 kb on - strand at 187.925 kb on - strand at 188.168 kb on + strand, within GFF160 at 188.169 kb on - strand, within GFF160 at 188.177 kb on + strand, within GFF160 at 188.178 kb on - strand, within GFF160 at 188.264 kb on + strand, within GFF160 at 188.265 kb on - strand, within GFF160 at 188.265 kb on - strand, within GFF160 at 188.402 kb on + strand, within GFF160 at 188.402 kb on + strand, within GFF160 at 188.403 kb on - strand, within GFF160 at 188.403 kb on - strand, within GFF160 at 188.403 kb on - strand, within GFF160 at 188.403 kb on - strand, within GFF160 at 188.574 kb on - strand at 188.596 kb on + strand at 188.596 kb on + strand at 188.596 kb on + strand at 188.596 kb on + strand at 188.597 kb on - strand at 188.597 kb on - strand at 188.662 kb on + strand, within GFF161 at 188.662 kb on + strand, within GFF161 at 188.662 kb on + strand, within GFF161 at 188.662 kb on + strand, within GFF161 at 188.663 kb on - strand, within GFF161 at 188.663 kb on - strand, within GFF161 at 188.663 kb on - strand, within GFF161 at 188.663 kb on - strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.728 kb on + strand, within GFF161 at 188.729 kb on - strand, within GFF161 at 188.729 kb on - strand, within GFF161 at 188.729 kb on - strand, within GFF161 at 188.729 kb on - strand, within GFF161 at 188.729 kb on - strand, within GFF161 at 188.729 kb on - strand, within GFF161 at 188.729 kb on - strand, within GFF161 at 188.735 kb on + strand, within GFF161 at 188.736 kb on - strand, within GFF161 at 188.819 kb on + strand, within GFF161 at 188.819 kb on + strand, within GFF161 at 188.820 kb on - strand, within GFF161 at 188.820 kb on - strand, within GFF161 at 188.820 kb on - strand, within GFF161
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 185,958 + GFF157 0.76 -1.9 185,958 + GFF157 0.76 -1.5 185,959 - GFF157 0.77 -1.7 185,971 - GFF157 0.79 -0.3 185,971 - GFF157 0.79 +0.7 186,021 + GFF157 0.87 +1.2 186,022 - GFF157 0.87 -0.1 186,042 + -0.4 186,043 - -1.9 186,043 - -2.1 186,063 + -0.5 186,063 + +0.4 186,063 + -0.9 186,063 + -3.4 186,064 - -1.2 186,064 - -0.3 186,064 - -0.9 186,078 + -2.0 186,078 + -1.9 186,116 + +1.9 186,116 + -0.1 186,117 - +1.2 186,117 - -0.3 186,117 - -1.1 186,117 - +2.2 186,847 + +0.1 186,848 - -1.5 186,848 - -2.7 187,163 + GFF159 0.31 +0.1 187,163 + GFF159 0.31 -1.3 187,163 + GFF159 0.31 +0.4 187,163 + GFF159 0.31 +0.5 187,163 + GFF159 0.31 -0.3 187,163 + GFF159 0.31 +2.8 187,164 - GFF159 0.31 +2.1 187,303 + GFF159 0.45 -2.6 187,303 + GFF159 0.45 -1.6 187,303 + GFF159 0.45 -0.4 187,303 + GFF159 0.45 -0.9 187,304 - GFF159 0.45 -1.9 187,304 - GFF159 0.45 +1.1 187,304 - GFF159 0.45 -2.8 187,304 - GFF159 0.45 +1.0 187,839 + -1.8 187,839 + +2.3 187,839 + -0.6 187,839 + -0.6 187,839 + -3.4 187,839 + +1.9 187,839 + -0.6 187,839 + -1.3 187,839 + -0.8 187,839 + -1.6 187,839 + -2.6 187,839 + -0.3 187,839 + +1.8 187,839 + -0.2 187,839 + -0.2 187,840 - +0.8 187,840 - -1.9 187,840 - -2.4 187,840 - +0.6 187,840 - -2.2 187,840 - -2.1 187,840 - -0.5 187,840 - -1.3 187,840 - -3.5 187,840 - +2.7 187,840 - -1.8 187,840 - -2.3 187,840 - -0.5 187,840 - +2.0 187,840 - -1.6 187,840 - -1.3 187,840 - +2.5 187,840 - -0.7 187,840 - +0.7 187,840 - -0.9 187,877 - -1.3 187,924 + +0.7 187,924 + -2.0 187,925 - -2.5 187,925 - -1.5 187,925 - -3.2 187,925 - +0.7 187,925 - +1.5 187,925 - -3.5 187,925 - +1.4 188,168 + GFF160 0.34 +2.0 188,169 - GFF160 0.34 -2.1 188,177 + GFF160 0.35 +1.2 188,178 - GFF160 0.35 -2.1 188,264 + GFF160 0.50 -0.7 188,265 - GFF160 0.50 -2.3 188,265 - GFF160 0.50 -2.0 188,402 + GFF160 0.73 -1.5 188,402 + GFF160 0.73 -1.3 188,403 - GFF160 0.73 -3.4 188,403 - GFF160 0.73 -1.5 188,403 - GFF160 0.73 -1.3 188,403 - GFF160 0.73 +0.4 188,574 - -0.2 188,596 + +0.7 188,596 + +0.1 188,596 + -0.3 188,596 + -2.9 188,597 - +0.7 188,597 - +0.7 188,662 + GFF161 0.16 +0.2 188,662 + GFF161 0.16 -0.4 188,662 + GFF161 0.16 +0.5 188,662 + GFF161 0.16 -0.6 188,663 - GFF161 0.16 -0.6 188,663 - GFF161 0.16 +1.0 188,663 - GFF161 0.16 -2.0 188,663 - GFF161 0.16 -1.6 188,728 + GFF161 0.27 -0.9 188,728 + GFF161 0.27 +1.2 188,728 + GFF161 0.27 +0.0 188,728 + GFF161 0.27 -1.3 188,728 + GFF161 0.27 -0.9 188,728 + GFF161 0.27 -0.8 188,728 + GFF161 0.27 +2.3 188,728 + GFF161 0.27 -0.9 188,728 + GFF161 0.27 +1.2 188,729 - GFF161 0.27 -2.8 188,729 - GFF161 0.27 -1.8 188,729 - GFF161 0.27 +1.7 188,729 - GFF161 0.27 -0.5 188,729 - GFF161 0.27 -2.0 188,729 - GFF161 0.27 -1.3 188,729 - GFF161 0.27 -1.2 188,735 + GFF161 0.28 -2.4 188,736 - GFF161 0.28 +0.4 188,819 + GFF161 0.41 -1.9 188,819 + GFF161 0.41 +0.7 188,820 - GFF161 0.41 +0.0 188,820 - GFF161 0.41 -1.3 188,820 - GFF161 0.41 -0.5
Or see this region's nucleotide sequence