Strain Fitness in Variovorax sp. SCN45 around GFF1528

Experiment: Community=Kojac gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Kojac gum; Passage=4
124,705	+		GFF1527	0.64	+0.2
124,705	+		GFF1527	0.64	-2.5
124,705	+		GFF1527	0.64	+0.6
124,706	-		GFF1527	0.64	-1.1
124,706	-		GFF1527	0.64	-0.0
124,706	-		GFF1527	0.64	-2.3
124,706	-		GFF1527	0.64	-1.1
124,855	+		GFF1527	0.70	-0.9
124,855	+		GFF1527	0.70	-2.0
124,856	-		GFF1527	0.70	+2.2
124,984	+		GFF1527	0.75	-0.4
125,026	+		GFF1527	0.77	+1.2
125,027	-		GFF1527	0.77	+0.8
125,027	-		GFF1527	0.77	-1.7
125,167	+		GFF1527	0.82	+2.4
125,167	+		GFF1527	0.82	-0.8
125,167	+		GFF1527	0.82	+0.2
125,167	+		GFF1527	0.82	+0.4
125,173	+		GFF1527	0.83	-2.7
125,173	+		GFF1527	0.83	+1.3
125,173	+		GFF1527	0.83	-0.8
125,173	+		GFF1527	0.83	-2.0
125,173	+		GFF1527	0.83	+2.9
125,173	+		GFF1527	0.83	-2.3
125,173	+		GFF1527	0.83	-2.1
125,173	+		GFF1527	0.83	+0.1
125,173	+		GFF1527	0.83	+1.2
125,173	+		GFF1527	0.83	-0.1
125,173	+		GFF1527	0.83	-0.1
125,173	+		GFF1527	0.83	-1.9
125,173	+		GFF1527	0.83	-0.7
125,173	+		GFF1527	0.83	+0.3
125,173	+		GFF1527	0.83	-0.1
125,173	+		GFF1527	0.83	+2.1
125,173	+		GFF1527	0.83	+1.5
125,174	-		GFF1527	0.83	-1.5
125,174	-		GFF1527	0.83	+0.6
125,174	-		GFF1527	0.83	-0.6
125,174	-		GFF1527	0.83	-1.6
125,174	-		GFF1527	0.83	-1.7
125,174	-		GFF1527	0.83	+0.1
125,174	-		GFF1527	0.83	-0.3
125,174	-		GFF1527	0.83	-0.4
125,281	+		GFF1527	0.87	+0.2
125,281	+		GFF1527	0.87	-2.5
125,281	+		GFF1527	0.87	-2.2
125,281	+		GFF1527	0.87	-0.1
125,282	-		GFF1527	0.87	+0.6
125,282	-		GFF1527	0.87	-1.1
125,339	-		GFF1527	0.89	-1.7
125,339	-		GFF1527	0.89	-4.0
125,339	-		GFF1527	0.89	+2.4
125,359	+				-1.4
125,420	-				-2.3
125,420	-				-0.5
125,420	-				-0.4
125,420	-				-0.6
125,428	+				+0.5
125,428	+				+0.7
125,428	+				-0.8
125,429	-				-1.8
125,446	+				+0.1
125,506	+				-0.1
125,506	+				+2.6
125,506	+				-1.1
125,507	-				+0.5
125,507	-				-0.9
125,549	-				+0.9
125,549	-				-0.7
125,549	-				+0.3
125,551	+				+0.6
125,551	+				-2.0
125,551	+				-0.4
125,551	+				+0.8
125,552	-				+0.6
125,587	+				-0.1
125,587	+				+0.2
125,587	+				-0.2
125,587	+				-0.9
125,951	-		GFF1528	0.28	+2.1
125,951	-		GFF1528	0.28	-1.7
125,951	-		GFF1528	0.28	-0.0
126,025	+		GFF1528	0.33	-1.4
126,026	-		GFF1528	0.34	+0.3
126,037	+		GFF1528	0.34	+0.6
126,037	+		GFF1528	0.34	+1.1
126,038	-		GFF1528	0.35	-1.1
126,050	+		GFF1528	0.35	-1.3
126,050	+		GFF1528	0.35	-0.4
126,050	+		GFF1528	0.35	-2.9
126,050	+		GFF1528	0.35	-2.1
126,050	+		GFF1528	0.35	-0.1
126,050	+		GFF1528	0.35	+1.0
126,051	-		GFF1528	0.36	+0.1
126,051	-		GFF1528	0.36	-0.8
126,051	-		GFF1528	0.36	+1.3
126,136	+		GFF1528	0.42	+0.2
126,136	+		GFF1528	0.42	+1.2
126,136	+		GFF1528	0.42	-3.3
126,136	+		GFF1528	0.42	+0.2
126,136	+		GFF1528	0.42	+0.6
126,136	+		GFF1528	0.42	+0.6
126,137	-		GFF1528	0.42	-0.4
126,137	-		GFF1528	0.42	-0.4
126,137	-		GFF1528	0.42	+0.7
126,137	-		GFF1528	0.42	-0.3
126,137	-		GFF1528	0.42	+1.8
126,137	-		GFF1528	0.42	-0.5
126,138	+		GFF1528	0.43	+0.7
126,138	+		GFF1528	0.43	-1.1
126,138	+		GFF1528	0.43	-0.1
126,138	+		GFF1528	0.43	-2.6
126,139	-		GFF1528	0.43	-0.8
126,258	-		GFF1528	0.52	-0.8
126,384	-		GFF1528	0.62	+0.1
126,493	+		GFF1528	0.71	+0.1
126,494	-		GFF1528	0.71	-2.3
126,506	-		GFF1528	0.72	+2.7
126,506	-		GFF1528	0.72	+1.2
126,506	-		GFF1528	0.72	+2.2
126,514	+		GFF1528	0.72	+1.6
126,515	-		GFF1528	0.73	-1.9
126,580	+		GFF1528	0.78	-0.5
126,580	+		GFF1528	0.78	+0.8
126,581	-		GFF1528	0.78	-1.1
126,581	-		GFF1528	0.78	-0.8
126,764	+				+0.6
126,854	-				-1.4
127,283	-		GFF1529	0.76	-2.0
127,456	+				-0.8
127,457	-				+0.6
127,463	-				+0.1
127,463	-				+0.6
127,578	+				-1.1
127,579	-				+1.8