Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1360 and GFF1361 are separated by 14 nucleotides GFF1361 and GFF1362 are separated by 94 nucleotides GFF1362 and GFF1363 are separated by 125 nucleotides GFF1363 and GFF1364 are separated by 18 nucleotides
GFF1360 - 3-demethylubiquinol 3-O-methyltransferase (EC 2.1.1.64) @ 2-polyprenyl-6-hydroxyphenyl methylase (EC 2.1.1.222), at 702,363 to 703,067
GFF1360
GFF1361 - no description, at 703,082 to 703,465
GFF1361
GFF1362 - no description, at 703,560 to 703,886
GFF1362
GFF1363 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 704,012 to 706,783
GFF1363
GFF1364 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 706,802 to 708,526
GFF1364
Position (kb) 704
705
706
707 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 703.137 kb on + strand, within GFF1361 at 703.137 kb on + strand, within GFF1361 at 703.137 kb on + strand, within GFF1361 at 703.388 kb on + strand, within GFF1361 at 703.389 kb on - strand, within GFF1361 at 703.389 kb on - strand, within GFF1361 at 703.423 kb on - strand, within GFF1361 at 703.423 kb on - strand, within GFF1361 at 703.423 kb on - strand, within GFF1361 at 703.426 kb on - strand, within GFF1361 at 703.426 kb on - strand, within GFF1361 at 703.518 kb on - strand at 703.521 kb on + strand at 703.614 kb on + strand, within GFF1362 at 703.614 kb on + strand, within GFF1362 at 703.614 kb on + strand, within GFF1362 at 703.614 kb on + strand, within GFF1362 at 703.614 kb on + strand, within GFF1362 at 703.614 kb on + strand, within GFF1362 at 703.615 kb on - strand, within GFF1362 at 703.615 kb on - strand, within GFF1362 at 703.615 kb on - strand, within GFF1362 at 703.752 kb on + strand, within GFF1362 at 703.931 kb on + strand at 703.956 kb on + strand at 704.010 kb on + strand at 704.011 kb on - strand at 704.011 kb on - strand at 704.011 kb on - strand at 704.053 kb on + strand at 704.053 kb on + strand at 704.053 kb on + strand at 704.054 kb on - strand at 704.054 kb on - strand at 704.054 kb on - strand at 704.054 kb on - strand at 704.054 kb on - strand at 704.054 kb on - strand at 704.095 kb on + strand at 704.096 kb on - strand at 704.096 kb on - strand at 704.423 kb on + strand, within GFF1363 at 704.424 kb on - strand, within GFF1363 at 704.424 kb on - strand, within GFF1363 at 704.471 kb on + strand, within GFF1363 at 704.546 kb on + strand, within GFF1363 at 704.843 kb on + strand, within GFF1363 at 704.844 kb on - strand, within GFF1363 at 704.844 kb on - strand, within GFF1363 at 705.038 kb on + strand, within GFF1363 at 705.197 kb on + strand, within GFF1363 at 705.197 kb on + strand, within GFF1363 at 705.198 kb on - strand, within GFF1363 at 705.398 kb on + strand, within GFF1363 at 705.398 kb on + strand, within GFF1363 at 705.399 kb on - strand, within GFF1363 at 705.665 kb on + strand, within GFF1363 at 705.665 kb on + strand, within GFF1363 at 705.665 kb on + strand, within GFF1363 at 705.665 kb on + strand, within GFF1363 at 705.666 kb on - strand, within GFF1363 at 705.666 kb on - strand, within GFF1363 at 705.683 kb on + strand, within GFF1363 at 705.684 kb on - strand, within GFF1363 at 705.812 kb on + strand, within GFF1363 at 705.813 kb on - strand, within GFF1363 at 705.920 kb on + strand, within GFF1363 at 705.920 kb on + strand, within GFF1363 at 705.920 kb on + strand, within GFF1363 at 705.921 kb on - strand, within GFF1363 at 705.921 kb on - strand, within GFF1363 at 706.037 kb on + strand, within GFF1363 at 706.037 kb on + strand, within GFF1363 at 706.037 kb on + strand, within GFF1363 at 706.037 kb on + strand, within GFF1363 at 706.037 kb on + strand, within GFF1363 at 706.038 kb on - strand, within GFF1363 at 706.038 kb on - strand, within GFF1363 at 706.038 kb on - strand, within GFF1363 at 706.038 kb on - strand, within GFF1363 at 706.038 kb on - strand, within GFF1363 at 706.142 kb on + strand, within GFF1363 at 706.142 kb on + strand, within GFF1363 at 706.142 kb on + strand, within GFF1363 at 706.143 kb on - strand, within GFF1363 at 706.143 kb on - strand, within GFF1363 at 706.143 kb on - strand, within GFF1363 at 706.143 kb on - strand, within GFF1363 at 706.143 kb on - strand, within GFF1363 at 706.295 kb on + strand, within GFF1363 at 706.296 kb on - strand, within GFF1363 at 706.372 kb on - strand, within GFF1363 at 706.427 kb on + strand, within GFF1363 at 706.697 kb on + strand at 706.698 kb on - strand at 706.839 kb on - strand at 706.854 kb on + strand at 706.854 kb on + strand at 706.854 kb on + strand at 706.855 kb on - strand at 707.235 kb on - strand, within GFF1364
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 703,137 + GFF1361 0.14 +1.2 703,137 + GFF1361 0.14 -1.9 703,137 + GFF1361 0.14 -2.4 703,388 + GFF1361 0.80 +1.0 703,389 - GFF1361 0.80 -0.3 703,389 - GFF1361 0.80 -1.5 703,423 - GFF1361 0.89 +1.5 703,423 - GFF1361 0.89 -2.8 703,423 - GFF1361 0.89 -0.9 703,426 - GFF1361 0.90 -0.7 703,426 - GFF1361 0.90 -1.0 703,518 - -0.1 703,521 + -0.2 703,614 + GFF1362 0.17 +3.0 703,614 + GFF1362 0.17 +0.8 703,614 + GFF1362 0.17 -2.3 703,614 + GFF1362 0.17 +1.1 703,614 + GFF1362 0.17 -0.0 703,614 + GFF1362 0.17 -0.2 703,615 - GFF1362 0.17 -0.8 703,615 - GFF1362 0.17 +0.9 703,615 - GFF1362 0.17 +0.9 703,752 + GFF1362 0.59 +2.1 703,931 + -2.4 703,956 + +0.2 704,010 + -0.4 704,011 - -0.3 704,011 - +1.2 704,011 - +2.6 704,053 + +0.8 704,053 + +0.2 704,053 + -2.1 704,054 - -1.2 704,054 - -1.0 704,054 - -1.0 704,054 - +0.0 704,054 - +2.0 704,054 - -0.8 704,095 + -0.4 704,096 - -0.6 704,096 - +0.4 704,423 + GFF1363 0.15 -1.2 704,424 - GFF1363 0.15 -1.5 704,424 - GFF1363 0.15 -2.9 704,471 + GFF1363 0.17 +2.3 704,546 + GFF1363 0.19 +1.1 704,843 + GFF1363 0.30 +0.1 704,844 - GFF1363 0.30 -0.0 704,844 - GFF1363 0.30 -1.0 705,038 + GFF1363 0.37 +0.8 705,197 + GFF1363 0.43 -3.3 705,197 + GFF1363 0.43 -0.8 705,198 - GFF1363 0.43 -3.0 705,398 + GFF1363 0.50 -1.5 705,398 + GFF1363 0.50 +1.6 705,399 - GFF1363 0.50 -1.5 705,665 + GFF1363 0.60 +1.4 705,665 + GFF1363 0.60 -1.2 705,665 + GFF1363 0.60 +0.0 705,665 + GFF1363 0.60 +0.3 705,666 - GFF1363 0.60 +0.3 705,666 - GFF1363 0.60 -1.9 705,683 + GFF1363 0.60 -1.1 705,684 - GFF1363 0.60 -0.0 705,812 + GFF1363 0.65 -1.9 705,813 - GFF1363 0.65 -0.8 705,920 + GFF1363 0.69 +0.1 705,920 + GFF1363 0.69 +1.3 705,920 + GFF1363 0.69 +1.3 705,921 - GFF1363 0.69 +0.4 705,921 - GFF1363 0.69 +2.2 706,037 + GFF1363 0.73 -1.4 706,037 + GFF1363 0.73 -0.2 706,037 + GFF1363 0.73 +1.6 706,037 + GFF1363 0.73 -1.8 706,037 + GFF1363 0.73 -1.6 706,038 - GFF1363 0.73 -0.2 706,038 - GFF1363 0.73 +1.2 706,038 - GFF1363 0.73 +0.8 706,038 - GFF1363 0.73 +0.2 706,038 - GFF1363 0.73 -0.1 706,142 + GFF1363 0.77 -1.3 706,142 + GFF1363 0.77 -0.5 706,142 + GFF1363 0.77 +0.1 706,143 - GFF1363 0.77 -1.0 706,143 - GFF1363 0.77 -0.6 706,143 - GFF1363 0.77 +0.2 706,143 - GFF1363 0.77 +0.9 706,143 - GFF1363 0.77 -0.2 706,295 + GFF1363 0.82 -2.6 706,296 - GFF1363 0.82 -1.4 706,372 - GFF1363 0.85 -1.5 706,427 + GFF1363 0.87 +1.1 706,697 + -1.7 706,698 - -1.4 706,839 - -0.2 706,854 + -0.9 706,854 + -1.9 706,854 + -0.4 706,855 - -2.0 707,235 - GFF1364 0.25 -2.6
Or see this region's nucleotide sequence