Strain Fitness in Variovorax sp. SCN45 around GFF1348

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1345 and GFF1346 overlap by 1 nucleotidesGFF1346 and GFF1347 are separated by 15 nucleotidesGFF1347 and GFF1348 are separated by 28 nucleotidesGFF1348 and GFF1349 are separated by 9 nucleotidesGFF1349 and GFF1350 are separated by 24 nucleotides GFF1345 - 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC), at 688,824 to 690,677 GFF1345 GFF1346 - hypothetical protein, at 690,677 to 690,928 GFF1346 GFF1347 - Dabb, at 690,944 to 691,246 GFF1347 GFF1348 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 691,275 to 692,072 GFF1348 GFF1349 - Thioesterase, at 692,082 to 692,546 GFF1349 GFF1350 - Quinone oxidoreductase (EC 1.6.5.5), at 692,571 to 693,587 GFF1350 Position (kb) 691 692 693Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 690.456 kb on + strand, within GFF1345at 690.456 kb on + strand, within GFF1345at 690.456 kb on + strand, within GFF1345at 690.457 kb on - strand, within GFF1345at 690.457 kb on - strand, within GFF1345at 690.457 kb on - strand, within GFF1345at 690.457 kb on - strand, within GFF1345at 690.457 kb on - strand, within GFF1345at 690.579 kb on + strandat 690.580 kb on - strandat 690.591 kb on + strandat 690.591 kb on + strandat 690.782 kb on + strand, within GFF1346at 690.782 kb on + strand, within GFF1346at 690.782 kb on + strand, within GFF1346at 690.783 kb on - strand, within GFF1346at 690.783 kb on - strand, within GFF1346at 690.899 kb on + strand, within GFF1346at 690.899 kb on + strand, within GFF1346at 690.899 kb on + strand, within GFF1346at 690.899 kb on + strand, within GFF1346at 690.900 kb on - strand, within GFF1346at 690.900 kb on - strand, within GFF1346at 690.900 kb on - strand, within GFF1346at 690.900 kb on - strand, within GFF1346at 690.900 kb on - strand, within GFF1346at 690.900 kb on - strand, within GFF1346at 690.900 kb on - strand, within GFF1346at 690.900 kb on - strand, within GFF1346at 690.926 kb on + strandat 691.109 kb on + strand, within GFF1347at 691.109 kb on + strand, within GFF1347at 691.110 kb on - strand, within GFF1347at 691.110 kb on - strand, within GFF1347at 691.110 kb on - strand, within GFF1347at 691.161 kb on - strand, within GFF1347at 691.235 kb on + strandat 691.235 kb on + strandat 691.235 kb on + strandat 691.236 kb on - strandat 691.650 kb on + strand, within GFF1348at 691.684 kb on - strand, within GFF1348at 691.773 kb on + strand, within GFF1348at 691.774 kb on - strand, within GFF1348at 691.774 kb on - strand, within GFF1348at 691.836 kb on + strand, within GFF1348at 691.836 kb on + strand, within GFF1348at 691.836 kb on + strand, within GFF1348at 691.837 kb on - strand, within GFF1348at 691.837 kb on - strand, within GFF1348at 691.837 kb on - strand, within GFF1348at 691.837 kb on - strand, within GFF1348at 692.199 kb on + strand, within GFF1349at 692.200 kb on - strand, within GFF1349at 692.200 kb on - strand, within GFF1349at 692.431 kb on - strand, within GFF1349at 692.431 kb on - strand, within GFF1349at 692.478 kb on + strand, within GFF1349at 692.566 kb on + strandat 692.567 kb on - strandat 692.567 kb on - strandat 692.697 kb on + strand, within GFF1350at 692.697 kb on + strand, within GFF1350at 692.697 kb on + strand, within GFF1350at 692.697 kb on + strand, within GFF1350at 692.697 kb on + strand, within GFF1350at 692.697 kb on + strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.698 kb on - strand, within GFF1350at 692.715 kb on + strand, within GFF1350at 692.715 kb on + strand, within GFF1350at 692.715 kb on + strand, within GFF1350at 692.716 kb on - strand, within GFF1350at 692.716 kb on - strand, within GFF1350at 692.748 kb on + strand, within GFF1350at 692.748 kb on + strand, within GFF1350at 692.749 kb on - strand, within GFF1350at 692.826 kb on + strand, within GFF1350at 692.826 kb on + strand, within GFF1350at 692.826 kb on + strand, within GFF1350at 692.827 kb on - strand, within GFF1350at 692.827 kb on - strand, within GFF1350at 692.827 kb on - strand, within GFF1350at 692.827 kb on - strand, within GFF1350at 692.827 kb on - strand, within GFF1350at 692.871 kb on + strand, within GFF1350at 692.871 kb on + strand, within GFF1350at 692.872 kb on - strand, within GFF1350at 692.872 kb on - strand, within GFF1350at 692.983 kb on - strand, within GFF1350

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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690,456 + GFF1345 0.88 +0.3
690,456 + GFF1345 0.88 -1.9
690,456 + GFF1345 0.88 -2.0
690,457 - GFF1345 0.88 -1.0
690,457 - GFF1345 0.88 -0.3
690,457 - GFF1345 0.88 -1.0
690,457 - GFF1345 0.88 -0.5
690,457 - GFF1345 0.88 -1.5
690,579 + +0.7
690,580 - -2.0
690,591 + -0.8
690,591 + -1.8
690,782 + GFF1346 0.42 -1.8
690,782 + GFF1346 0.42 -0.8
690,782 + GFF1346 0.42 +1.6
690,783 - GFF1346 0.42 -1.2
690,783 - GFF1346 0.42 +4.0
690,899 + GFF1346 0.88 +0.2
690,899 + GFF1346 0.88 -2.0
690,899 + GFF1346 0.88 -0.5
690,899 + GFF1346 0.88 +0.8
690,900 - GFF1346 0.88 -0.5
690,900 - GFF1346 0.88 -1.9
690,900 - GFF1346 0.88 -0.4
690,900 - GFF1346 0.88 -2.6
690,900 - GFF1346 0.88 +0.2
690,900 - GFF1346 0.88 -0.3
690,900 - GFF1346 0.88 -0.5
690,900 - GFF1346 0.88 -1.0
690,926 + -1.2
691,109 + GFF1347 0.54 +0.4
691,109 + GFF1347 0.54 -0.4
691,110 - GFF1347 0.55 -3.5
691,110 - GFF1347 0.55 -2.2
691,110 - GFF1347 0.55 -3.4
691,161 - GFF1347 0.72 +0.5
691,235 + -1.9
691,235 + +0.5
691,235 + -1.6
691,236 - -1.5
691,650 + GFF1348 0.47 -1.0
691,684 - GFF1348 0.51 -0.2
691,773 + GFF1348 0.62 -0.8
691,774 - GFF1348 0.63 +0.8
691,774 - GFF1348 0.63 -0.4
691,836 + GFF1348 0.70 -1.8
691,836 + GFF1348 0.70 -1.8
691,836 + GFF1348 0.70 +0.5
691,837 - GFF1348 0.70 +4.0
691,837 - GFF1348 0.70 -2.0
691,837 - GFF1348 0.70 +1.5
691,837 - GFF1348 0.70 +2.2
692,199 + GFF1349 0.25 -1.6
692,200 - GFF1349 0.25 +0.2
692,200 - GFF1349 0.25 -3.3
692,431 - GFF1349 0.75 +0.2
692,431 - GFF1349 0.75 -0.9
692,478 + GFF1349 0.85 -1.5
692,566 + -0.5
692,567 - -2.6
692,567 - -0.1
692,697 + GFF1350 0.12 +0.5
692,697 + GFF1350 0.12 -0.5
692,697 + GFF1350 0.12 -0.5
692,697 + GFF1350 0.12 +2.8
692,697 + GFF1350 0.12 +1.0
692,697 + GFF1350 0.12 -1.5
692,698 - GFF1350 0.12 -0.7
692,698 - GFF1350 0.12 -0.5
692,698 - GFF1350 0.12 +2.9
692,698 - GFF1350 0.12 -0.9
692,698 - GFF1350 0.12 +1.8
692,698 - GFF1350 0.12 +0.2
692,698 - GFF1350 0.12 +0.9
692,698 - GFF1350 0.12 -0.4
692,698 - GFF1350 0.12 +0.3
692,715 + GFF1350 0.14 +0.1
692,715 + GFF1350 0.14 +1.5
692,715 + GFF1350 0.14 -0.1
692,716 - GFF1350 0.14 -0.1
692,716 - GFF1350 0.14 -0.8
692,748 + GFF1350 0.17 -1.6
692,748 + GFF1350 0.17 +0.4
692,749 - GFF1350 0.18 +0.5
692,826 + GFF1350 0.25 -2.0
692,826 + GFF1350 0.25 +0.1
692,826 + GFF1350 0.25 +0.5
692,827 - GFF1350 0.25 -0.5
692,827 - GFF1350 0.25 +0.3
692,827 - GFF1350 0.25 -0.6
692,827 - GFF1350 0.25 +0.8
692,827 - GFF1350 0.25 +0.8
692,871 + GFF1350 0.29 -1.0
692,871 + GFF1350 0.29 +0.8
692,872 - GFF1350 0.30 -1.2
692,872 - GFF1350 0.30 -2.2
692,983 - GFF1350 0.41 -1.6

Or see this region's nucleotide sequence