Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1342 and GFF1343 are separated by 31 nucleotides GFF1343 and GFF1344 are separated by 46 nucleotides
GFF1342 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 683,850 to 685,955
GFF1342
GFF1343 - macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides, at 685,987 to 687,462
GFF1343
GFF1344 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 687,509 to 688,684
GFF1344
Position (kb) 685
686
687
688 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 685.323 kb on + strand, within GFF1342 at 685.323 kb on + strand, within GFF1342 at 685.323 kb on + strand, within GFF1342 at 685.323 kb on + strand, within GFF1342 at 685.323 kb on + strand, within GFF1342 at 685.324 kb on - strand, within GFF1342 at 685.324 kb on - strand, within GFF1342 at 685.324 kb on - strand, within GFF1342 at 685.497 kb on + strand, within GFF1342 at 685.498 kb on - strand, within GFF1342 at 685.498 kb on - strand, within GFF1342 at 685.498 kb on - strand, within GFF1342 at 685.563 kb on + strand, within GFF1342 at 685.569 kb on + strand, within GFF1342 at 685.570 kb on - strand, within GFF1342 at 685.695 kb on + strand, within GFF1342 at 685.695 kb on + strand, within GFF1342 at 685.695 kb on + strand, within GFF1342 at 685.696 kb on - strand, within GFF1342 at 685.696 kb on - strand, within GFF1342 at 685.696 kb on - strand, within GFF1342 at 685.770 kb on + strand at 685.770 kb on + strand at 685.770 kb on + strand at 685.771 kb on - strand at 685.771 kb on - strand at 685.771 kb on - strand at 685.818 kb on + strand at 685.818 kb on + strand at 685.819 kb on - strand at 685.839 kb on + strand at 685.839 kb on + strand at 685.839 kb on + strand at 685.839 kb on + strand at 685.840 kb on - strand at 685.840 kb on - strand at 686.221 kb on + strand, within GFF1343 at 686.222 kb on - strand, within GFF1343 at 686.293 kb on + strand, within GFF1343 at 686.293 kb on + strand, within GFF1343 at 686.294 kb on - strand, within GFF1343 at 686.294 kb on - strand, within GFF1343 at 686.425 kb on + strand, within GFF1343 at 686.425 kb on + strand, within GFF1343 at 686.530 kb on + strand, within GFF1343 at 686.530 kb on + strand, within GFF1343 at 686.530 kb on + strand, within GFF1343 at 686.531 kb on - strand, within GFF1343 at 686.661 kb on - strand, within GFF1343 at 686.714 kb on - strand, within GFF1343 at 687.022 kb on - strand, within GFF1343 at 687.022 kb on - strand, within GFF1343 at 687.152 kb on - strand, within GFF1343 at 687.152 kb on - strand, within GFF1343 at 687.397 kb on + strand at 687.398 kb on - strand at 687.418 kb on + strand at 687.418 kb on + strand at 687.418 kb on + strand at 687.418 kb on + strand at 687.418 kb on + strand at 687.418 kb on + strand at 687.419 kb on - strand at 687.842 kb on + strand, within GFF1344 at 687.842 kb on + strand, within GFF1344 at 687.842 kb on + strand, within GFF1344 at 687.842 kb on + strand, within GFF1344 at 687.842 kb on + strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.843 kb on - strand, within GFF1344 at 687.941 kb on + strand, within GFF1344 at 687.941 kb on + strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.942 kb on - strand, within GFF1344 at 687.984 kb on - strand, within GFF1344 at 687.984 kb on - strand, within GFF1344 at 688.013 kb on + strand, within GFF1344 at 688.292 kb on + strand, within GFF1344 at 688.292 kb on + strand, within GFF1344 at 688.293 kb on - strand, within GFF1344 at 688.293 kb on - strand, within GFF1344
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 685,323 + GFF1342 0.70 -0.8 685,323 + GFF1342 0.70 +2.0 685,323 + GFF1342 0.70 -2.0 685,323 + GFF1342 0.70 -0.7 685,323 + GFF1342 0.70 -2.0 685,324 - GFF1342 0.70 -3.0 685,324 - GFF1342 0.70 -0.4 685,324 - GFF1342 0.70 +1.4 685,497 + GFF1342 0.78 +0.4 685,498 - GFF1342 0.78 -2.0 685,498 - GFF1342 0.78 +0.7 685,498 - GFF1342 0.78 -0.5 685,563 + GFF1342 0.81 -1.8 685,569 + GFF1342 0.82 +1.9 685,570 - GFF1342 0.82 -3.3 685,695 + GFF1342 0.88 -0.2 685,695 + GFF1342 0.88 +0.2 685,695 + GFF1342 0.88 -1.5 685,696 - GFF1342 0.88 -1.0 685,696 - GFF1342 0.88 -2.1 685,696 - GFF1342 0.88 -1.6 685,770 + -1.2 685,770 + -0.8 685,770 + -0.8 685,771 - -0.8 685,771 - -0.0 685,771 - -0.1 685,818 + -3.0 685,818 + -0.3 685,819 - -0.9 685,839 + -0.6 685,839 + +0.8 685,839 + -1.8 685,839 + -0.2 685,840 - -2.3 685,840 - +1.3 686,221 + GFF1343 0.16 +0.7 686,222 - GFF1343 0.16 -1.9 686,293 + GFF1343 0.21 +1.9 686,293 + GFF1343 0.21 -1.6 686,294 - GFF1343 0.21 -0.8 686,294 - GFF1343 0.21 +0.7 686,425 + GFF1343 0.30 -2.3 686,425 + GFF1343 0.30 +0.1 686,530 + GFF1343 0.37 -2.2 686,530 + GFF1343 0.37 -1.6 686,530 + GFF1343 0.37 -0.5 686,531 - GFF1343 0.37 -0.3 686,661 - GFF1343 0.46 -0.6 686,714 - GFF1343 0.49 -2.3 687,022 - GFF1343 0.70 -1.5 687,022 - GFF1343 0.70 +0.4 687,152 - GFF1343 0.79 +0.0 687,152 - GFF1343 0.79 -1.7 687,397 + -0.4 687,398 - -1.1 687,418 + -1.6 687,418 + +0.4 687,418 + -0.5 687,418 + -1.5 687,418 + -1.8 687,418 + -1.4 687,419 - +3.2 687,842 + GFF1344 0.28 +1.2 687,842 + GFF1344 0.28 -0.1 687,842 + GFF1344 0.28 +0.2 687,842 + GFF1344 0.28 -2.5 687,842 + GFF1344 0.28 +0.0 687,843 - GFF1344 0.28 -1.2 687,843 - GFF1344 0.28 +1.1 687,843 - GFF1344 0.28 -2.6 687,843 - GFF1344 0.28 -3.2 687,843 - GFF1344 0.28 +0.7 687,843 - GFF1344 0.28 -0.2 687,843 - GFF1344 0.28 -0.7 687,843 - GFF1344 0.28 -0.5 687,941 + GFF1344 0.37 -0.5 687,941 + GFF1344 0.37 +1.5 687,942 - GFF1344 0.37 +1.3 687,942 - GFF1344 0.37 +0.7 687,942 - GFF1344 0.37 -1.6 687,942 - GFF1344 0.37 -1.6 687,942 - GFF1344 0.37 +0.9 687,984 - GFF1344 0.40 -1.6 687,984 - GFF1344 0.40 -1.1 688,013 + GFF1344 0.43 -1.6 688,292 + GFF1344 0.67 -1.4 688,292 + GFF1344 0.67 -2.3 688,293 - GFF1344 0.67 -1.6 688,293 - GFF1344 0.67 -3.4
Or see this region's nucleotide sequence