Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1317 and GFF1318 are separated by 2 nucleotides GFF1318 and GFF1319 overlap by 4 nucleotides GFF1319 and GFF1320 are separated by 200 nucleotides
GFF1317 - no description, at 653,425 to 654,222
GFF1317
GFF1318 - hypothetical protein, at 654,225 to 654,722
GFF1318
GFF1319 - no description, at 654,719 to 655,192
GFF1319
GFF1320 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 655,393 to 657,480
GFF1320
Position (kb) 654
655
656 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.720 kb on + strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.721 kb on - strand, within GFF1317 at 653.825 kb on + strand, within GFF1317 at 653.825 kb on + strand, within GFF1317 at 653.826 kb on - strand, within GFF1317 at 653.826 kb on - strand, within GFF1317 at 653.826 kb on - strand, within GFF1317 at 653.826 kb on - strand, within GFF1317 at 653.826 kb on - strand, within GFF1317 at 654.184 kb on + strand at 654.184 kb on + strand at 654.184 kb on + strand at 654.184 kb on + strand at 654.184 kb on + strand at 654.184 kb on + strand at 654.185 kb on - strand at 654.185 kb on - strand at 654.185 kb on - strand at 654.185 kb on - strand at 654.185 kb on - strand at 654.185 kb on - strand at 654.649 kb on + strand, within GFF1318 at 654.649 kb on + strand, within GFF1318 at 654.649 kb on + strand, within GFF1318 at 654.649 kb on + strand, within GFF1318 at 654.649 kb on + strand, within GFF1318 at 654.650 kb on - strand, within GFF1318 at 654.650 kb on - strand, within GFF1318 at 654.650 kb on - strand, within GFF1318 at 654.650 kb on - strand, within GFF1318 at 654.650 kb on - strand, within GFF1318 at 654.751 kb on + strand at 654.752 kb on - strand at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.834 kb on + strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 654.835 kb on - strand, within GFF1319 at 655.012 kb on + strand, within GFF1319 at 655.012 kb on + strand, within GFF1319 at 655.012 kb on + strand, within GFF1319 at 655.012 kb on + strand, within GFF1319 at 655.012 kb on + strand, within GFF1319 at 655.012 kb on + strand, within GFF1319 at 655.012 kb on + strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.013 kb on - strand, within GFF1319 at 655.124 kb on + strand, within GFF1319 at 655.161 kb on + strand at 655.161 kb on + strand at 655.161 kb on + strand at 655.161 kb on + strand at 655.161 kb on + strand at 655.161 kb on + strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.162 kb on - strand at 655.164 kb on + strand at 655.164 kb on + strand at 655.164 kb on + strand at 655.164 kb on + strand at 655.164 kb on + strand at 655.164 kb on + strand at 655.164 kb on + strand at 655.165 kb on - strand at 655.165 kb on - strand at 655.165 kb on - strand at 655.165 kb on - strand at 655.166 kb on - strand at 655.171 kb on + strand at 655.171 kb on + strand at 655.171 kb on + strand at 655.171 kb on + strand at 655.172 kb on - strand at 655.172 kb on - strand at 655.172 kb on - strand at 655.188 kb on + strand at 655.188 kb on + strand at 655.218 kb on - strand at 655.218 kb on - strand at 655.218 kb on - strand at 655.242 kb on + strand at 655.242 kb on + strand at 655.242 kb on + strand at 655.243 kb on - strand at 655.340 kb on + strand at 655.340 kb on + strand at 655.340 kb on + strand at 655.341 kb on - strand at 655.341 kb on - strand at 655.341 kb on - strand at 655.341 kb on - strand at 655.341 kb on - strand at 655.341 kb on - strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.394 kb on + strand at 655.395 kb on - strand at 655.395 kb on - strand at 655.395 kb on - strand at 655.395 kb on - strand at 655.395 kb on - strand at 655.395 kb on - strand at 655.395 kb on - strand at 655.532 kb on + strand at 655.532 kb on + strand at 655.532 kb on + strand at 655.532 kb on + strand at 655.532 kb on + strand at 655.532 kb on + strand at 655.533 kb on - strand at 655.533 kb on - strand at 655.533 kb on - strand at 655.533 kb on - strand at 655.533 kb on - strand at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.132 kb on + strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320 at 656.133 kb on - strand, within GFF1320
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 653,720 + GFF1317 0.37 -1.4 653,720 + GFF1317 0.37 +0.3 653,720 + GFF1317 0.37 +1.2 653,720 + GFF1317 0.37 -1.6 653,720 + GFF1317 0.37 +0.7 653,720 + GFF1317 0.37 -0.2 653,720 + GFF1317 0.37 -1.6 653,720 + GFF1317 0.37 +1.2 653,720 + GFF1317 0.37 +0.8 653,720 + GFF1317 0.37 +0.5 653,720 + GFF1317 0.37 +0.1 653,721 - GFF1317 0.37 -2.6 653,721 - GFF1317 0.37 -1.3 653,721 - GFF1317 0.37 -0.2 653,721 - GFF1317 0.37 -0.2 653,721 - GFF1317 0.37 -1.0 653,721 - GFF1317 0.37 -1.5 653,721 - GFF1317 0.37 -0.2 653,721 - GFF1317 0.37 +0.6 653,721 - GFF1317 0.37 -0.2 653,721 - GFF1317 0.37 -0.1 653,721 - GFF1317 0.37 -2.7 653,721 - GFF1317 0.37 -0.8 653,721 - GFF1317 0.37 +0.6 653,721 - GFF1317 0.37 +0.2 653,721 - GFF1317 0.37 -1.0 653,721 - GFF1317 0.37 -3.5 653,721 - GFF1317 0.37 +2.3 653,825 + GFF1317 0.50 +1.4 653,825 + GFF1317 0.50 -1.0 653,826 - GFF1317 0.50 -0.8 653,826 - GFF1317 0.50 +0.7 653,826 - GFF1317 0.50 +0.8 653,826 - GFF1317 0.50 -2.0 653,826 - GFF1317 0.50 -0.8 654,184 + -0.8 654,184 + -2.1 654,184 + -2.6 654,184 + -0.8 654,184 + -2.6 654,184 + -0.2 654,185 - +1.1 654,185 - -0.2 654,185 - -0.6 654,185 - +0.8 654,185 - -1.8 654,185 - -1.2 654,649 + GFF1318 0.85 +0.4 654,649 + GFF1318 0.85 -0.2 654,649 + GFF1318 0.85 -1.6 654,649 + GFF1318 0.85 +0.8 654,649 + GFF1318 0.85 +1.0 654,650 - GFF1318 0.85 -1.2 654,650 - GFF1318 0.85 -0.2 654,650 - GFF1318 0.85 -1.6 654,650 - GFF1318 0.85 -0.1 654,650 - GFF1318 0.85 +0.5 654,751 + +0.0 654,752 - -1.5 654,834 + GFF1319 0.24 +1.8 654,834 + GFF1319 0.24 -1.0 654,834 + GFF1319 0.24 -0.6 654,834 + GFF1319 0.24 -2.1 654,834 + GFF1319 0.24 -1.4 654,834 + GFF1319 0.24 -0.2 654,834 + GFF1319 0.24 +0.7 654,834 + GFF1319 0.24 -2.0 654,834 + GFF1319 0.24 +0.2 654,834 + GFF1319 0.24 +1.4 654,834 + GFF1319 0.24 +0.5 654,834 + GFF1319 0.24 -0.2 654,834 + GFF1319 0.24 +2.2 654,834 + GFF1319 0.24 +1.5 654,834 + GFF1319 0.24 -1.0 654,835 - GFF1319 0.24 -1.3 654,835 - GFF1319 0.24 -1.5 654,835 - GFF1319 0.24 -2.3 654,835 - GFF1319 0.24 -0.4 654,835 - GFF1319 0.24 +0.4 654,835 - GFF1319 0.24 -1.2 654,835 - GFF1319 0.24 -1.4 654,835 - GFF1319 0.24 +1.1 654,835 - GFF1319 0.24 +1.8 654,835 - GFF1319 0.24 -0.1 654,835 - GFF1319 0.24 -1.9 654,835 - GFF1319 0.24 +0.8 654,835 - GFF1319 0.24 -0.3 654,835 - GFF1319 0.24 +0.9 654,835 - GFF1319 0.24 +2.9 655,012 + GFF1319 0.62 +0.2 655,012 + GFF1319 0.62 +0.2 655,012 + GFF1319 0.62 +1.7 655,012 + GFF1319 0.62 +0.3 655,012 + GFF1319 0.62 -0.3 655,012 + GFF1319 0.62 -1.4 655,012 + GFF1319 0.62 +1.9 655,013 - GFF1319 0.62 -0.6 655,013 - GFF1319 0.62 +1.9 655,013 - GFF1319 0.62 -1.9 655,013 - GFF1319 0.62 -0.9 655,013 - GFF1319 0.62 +0.7 655,013 - GFF1319 0.62 -0.2 655,013 - GFF1319 0.62 +0.8 655,013 - GFF1319 0.62 +0.1 655,124 + GFF1319 0.85 -0.9 655,161 + -2.6 655,161 + -1.0 655,161 + +1.1 655,161 + +0.2 655,161 + +2.1 655,161 + +1.1 655,162 - -1.0 655,162 - +0.8 655,162 - +0.4 655,162 - -2.1 655,162 - -0.8 655,162 - -1.6 655,162 - -1.6 655,164 + +1.8 655,164 + +1.4 655,164 + +1.1 655,164 + +0.2 655,164 + -1.5 655,164 + -2.3 655,164 + -1.6 655,165 - +0.2 655,165 - -0.5 655,165 - -1.8 655,165 - -0.8 655,166 - -3.4 655,171 + +1.1 655,171 + -1.5 655,171 + +1.2 655,171 + -0.8 655,172 - +0.4 655,172 - -0.2 655,172 - -0.4 655,188 + +0.4 655,188 + -1.9 655,218 - +0.6 655,218 - -0.6 655,218 - -3.6 655,242 + -0.7 655,242 + -2.3 655,242 + -1.4 655,243 - +2.1 655,340 + +0.5 655,340 + -0.5 655,340 + -1.8 655,341 - -0.6 655,341 - -0.0 655,341 - +0.8 655,341 - -1.2 655,341 - -2.7 655,341 - -1.8 655,394 + -0.2 655,394 + -2.0 655,394 + +1.2 655,394 + -0.2 655,394 + +0.8 655,394 + -0.4 655,394 + -2.4 655,394 + -3.2 655,394 + -1.4 655,394 + +1.5 655,395 - -3.5 655,395 - +1.8 655,395 - -0.7 655,395 - -2.1 655,395 - -1.4 655,395 - -1.5 655,395 - -1.6 655,532 + -1.1 655,532 + +3.1 655,532 + -1.0 655,532 + +0.6 655,532 + +0.4 655,532 + +0.5 655,533 - +0.2 655,533 - +1.0 655,533 - -1.2 655,533 - -0.8 655,533 - -0.5 656,132 + GFF1320 0.35 -1.4 656,132 + GFF1320 0.35 +1.3 656,132 + GFF1320 0.35 -0.0 656,132 + GFF1320 0.35 -2.7 656,132 + GFF1320 0.35 -0.5 656,132 + GFF1320 0.35 -1.5 656,132 + GFF1320 0.35 -0.2 656,132 + GFF1320 0.35 +0.2 656,132 + GFF1320 0.35 +1.4 656,133 - GFF1320 0.35 -2.0 656,133 - GFF1320 0.35 -0.4 656,133 - GFF1320 0.35 -1.4 656,133 - GFF1320 0.35 -0.2 656,133 - GFF1320 0.35 -0.8 656,133 - GFF1320 0.35 +0.2 656,133 - GFF1320 0.35 +0.8 656,133 - GFF1320 0.35 -0.2 656,133 - GFF1320 0.35 +2.5 656,133 - GFF1320 0.35 +1.0
Or see this region's nucleotide sequence