Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1267 and GFF1268 are separated by 117 nucleotides GFF1268 and GFF1269 overlap by 4 nucleotides GFF1269 and GFF1270 are separated by 0 nucleotides
GFF1267 - Probable lipoprotein signal peptide, at 583,258 to 584,262
GFF1267
GFF1268 - FIG022199: FAD-binding protein, at 584,380 to 585,738
GFF1268
GFF1269 - no description, at 585,735 to 586,127
GFF1269
GFF1270 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 586,128 to 601,286
GFF1270
Position (kb) 584
585
586 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 583.782 kb on - strand, within GFF1267 at 583.997 kb on + strand, within GFF1267 at 584.298 kb on - strand at 584.298 kb on - strand at 584.340 kb on - strand at 584.355 kb on + strand at 584.356 kb on - strand at 584.804 kb on + strand, within GFF1268 at 584.804 kb on + strand, within GFF1268 at 585.116 kb on - strand, within GFF1268 at 585.116 kb on - strand, within GFF1268 at 585.116 kb on - strand, within GFF1268 at 585.118 kb on + strand, within GFF1268 at 585.118 kb on + strand, within GFF1268 at 585.118 kb on + strand, within GFF1268 at 585.157 kb on + strand, within GFF1268 at 585.337 kb on + strand, within GFF1268 at 585.337 kb on + strand, within GFF1268 at 585.338 kb on - strand, within GFF1268 at 585.460 kb on + strand, within GFF1268 at 585.460 kb on + strand, within GFF1268 at 585.461 kb on - strand, within GFF1268 at 585.475 kb on + strand, within GFF1268 at 585.475 kb on + strand, within GFF1268 at 585.508 kb on + strand, within GFF1268 at 585.514 kb on + strand, within GFF1268 at 585.515 kb on - strand, within GFF1268 at 585.574 kb on + strand, within GFF1268 at 585.574 kb on + strand, within GFF1268 at 585.575 kb on - strand, within GFF1268 at 585.575 kb on - strand, within GFF1268 at 585.575 kb on - strand, within GFF1268 at 585.622 kb on + strand at 585.622 kb on + strand at 585.622 kb on + strand at 585.623 kb on - strand at 585.623 kb on - strand at 585.623 kb on - strand at 585.623 kb on - strand at 585.626 kb on - strand at 585.720 kb on + strand at 585.720 kb on + strand at 585.720 kb on + strand at 585.721 kb on - strand at 585.747 kb on - strand at 585.824 kb on + strand, within GFF1269 at 585.824 kb on + strand, within GFF1269 at 585.867 kb on + strand, within GFF1269 at 585.867 kb on + strand, within GFF1269 at 585.868 kb on - strand, within GFF1269 at 585.868 kb on - strand, within GFF1269 at 585.868 kb on - strand, within GFF1269 at 585.868 kb on - strand, within GFF1269 at 585.894 kb on + strand, within GFF1269 at 585.895 kb on - strand, within GFF1269 at 585.895 kb on - strand, within GFF1269 at 585.911 kb on + strand, within GFF1269 at 585.911 kb on + strand, within GFF1269 at 585.911 kb on + strand, within GFF1269 at 585.911 kb on + strand, within GFF1269 at 585.912 kb on - strand, within GFF1269 at 586.242 kb on + strand at 586.242 kb on + strand at 586.242 kb on + strand at 586.242 kb on + strand at 586.242 kb on + strand at 586.242 kb on + strand at 586.332 kb on + strand at 586.332 kb on + strand at 586.332 kb on + strand at 586.333 kb on - strand at 586.476 kb on + strand at 586.476 kb on + strand at 586.477 kb on - strand at 586.503 kb on + strand at 586.503 kb on + strand at 586.503 kb on + strand at 586.503 kb on + strand at 586.503 kb on + strand at 586.504 kb on - strand at 586.504 kb on - strand at 586.504 kb on - strand at 586.504 kb on - strand at 586.504 kb on - strand at 586.504 kb on - strand at 586.504 kb on - strand at 586.504 kb on - strand at 586.545 kb on + strand at 586.545 kb on + strand at 586.567 kb on - strand at 586.567 kb on - strand at 586.567 kb on - strand at 586.642 kb on + strand at 586.643 kb on - strand at 586.668 kb on + strand at 586.668 kb on + strand at 586.669 kb on - strand at 586.669 kb on - strand at 586.674 kb on + strand at 586.674 kb on + strand at 586.675 kb on - strand at 586.675 kb on - strand at 586.675 kb on - strand at 586.675 kb on - strand at 586.728 kb on + strand at 586.738 kb on - strand at 586.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 583,782 - GFF1267 0.52 -0.8 583,997 + GFF1267 0.74 -0.2 584,298 - +2.7 584,298 - +0.1 584,340 - +2.1 584,355 + +1.1 584,356 - -2.0 584,804 + GFF1268 0.31 +0.2 584,804 + GFF1268 0.31 -0.1 585,116 - GFF1268 0.54 -0.3 585,116 - GFF1268 0.54 +1.6 585,116 - GFF1268 0.54 +1.7 585,118 + GFF1268 0.54 +1.2 585,118 + GFF1268 0.54 +1.6 585,118 + GFF1268 0.54 -4.8 585,157 + GFF1268 0.57 -1.0 585,337 + GFF1268 0.70 +0.7 585,337 + GFF1268 0.70 +0.8 585,338 - GFF1268 0.70 +0.3 585,460 + GFF1268 0.79 +0.2 585,460 + GFF1268 0.79 +3.0 585,461 - GFF1268 0.80 +2.1 585,475 + GFF1268 0.81 -1.5 585,475 + GFF1268 0.81 -0.4 585,508 + GFF1268 0.83 +0.7 585,514 + GFF1268 0.83 -1.8 585,515 - GFF1268 0.84 +1.9 585,574 + GFF1268 0.88 -2.3 585,574 + GFF1268 0.88 +0.7 585,575 - GFF1268 0.88 -0.2 585,575 - GFF1268 0.88 -0.2 585,575 - GFF1268 0.88 +0.7 585,622 + -1.6 585,622 + -0.6 585,622 + -2.9 585,623 - +0.6 585,623 - -1.1 585,623 - +0.0 585,623 - -0.5 585,626 - +0.5 585,720 + -1.0 585,720 + -1.3 585,720 + -0.5 585,721 - -1.3 585,747 - +0.2 585,824 + GFF1269 0.23 -0.4 585,824 + GFF1269 0.23 +2.8 585,867 + GFF1269 0.34 -2.9 585,867 + GFF1269 0.34 -0.8 585,868 - GFF1269 0.34 +0.1 585,868 - GFF1269 0.34 -0.1 585,868 - GFF1269 0.34 -1.2 585,868 - GFF1269 0.34 +2.5 585,894 + GFF1269 0.40 +1.8 585,895 - GFF1269 0.41 +0.5 585,895 - GFF1269 0.41 -1.5 585,911 + GFF1269 0.45 -1.0 585,911 + GFF1269 0.45 -2.3 585,911 + GFF1269 0.45 +0.2 585,911 + GFF1269 0.45 +2.0 585,912 - GFF1269 0.45 -0.8 586,242 + +0.8 586,242 + -0.0 586,242 + +1.1 586,242 + -0.3 586,242 + -0.9 586,242 + +0.1 586,332 + +1.1 586,332 + +0.3 586,332 + -3.4 586,333 - +1.8 586,476 + -2.5 586,476 + -1.6 586,477 - -0.2 586,503 + +0.0 586,503 + -0.1 586,503 + -1.0 586,503 + +0.9 586,503 + -1.0 586,504 - -1.0 586,504 - -0.3 586,504 - +0.2 586,504 - -1.5 586,504 - -0.5 586,504 - +0.5 586,504 - -0.5 586,504 - -0.2 586,545 + -0.8 586,545 + -1.8 586,567 - -2.3 586,567 - -0.2 586,567 - +1.4 586,642 + -1.1 586,643 - +0.3 586,668 + -2.6 586,668 + -0.1 586,669 - -1.9 586,669 - -0.9 586,674 + +0.4 586,674 + -1.2 586,675 - -1.2 586,675 - -2.5 586,675 - +2.6 586,675 - -2.5 586,728 + -1.0 586,738 - -2.0 586,738 - -3.2
Or see this region's nucleotide sequence