Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1266 and GFF1267 are separated by 4 nucleotides GFF1267 and GFF1268 are separated by 117 nucleotides
GFF1266 - Cysteine desulfurase (EC 2.8.1.7), at 581,448 to 583,253
GFF1266
GFF1267 - Probable lipoprotein signal peptide, at 583,258 to 584,262
GFF1267
GFF1268 - FIG022199: FAD-binding protein, at 584,380 to 585,738
GFF1268
Position (kb) 583
584
585 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 582.820 kb on + strand, within GFF1266 at 582.820 kb on + strand, within GFF1266 at 582.821 kb on - strand, within GFF1266 at 582.821 kb on - strand, within GFF1266 at 582.900 kb on + strand, within GFF1266 at 582.901 kb on - strand, within GFF1266 at 582.901 kb on - strand, within GFF1266 at 582.901 kb on - strand, within GFF1266 at 582.957 kb on + strand, within GFF1266 at 582.958 kb on - strand, within GFF1266 at 582.958 kb on - strand, within GFF1266 at 583.051 kb on - strand, within GFF1266 at 583.179 kb on + strand at 583.179 kb on + strand at 583.180 kb on - strand at 583.782 kb on - strand, within GFF1267 at 583.997 kb on + strand, within GFF1267 at 584.298 kb on - strand at 584.298 kb on - strand at 584.340 kb on - strand at 584.355 kb on + strand at 584.356 kb on - strand at 584.804 kb on + strand, within GFF1268 at 584.804 kb on + strand, within GFF1268 at 585.116 kb on - strand, within GFF1268 at 585.116 kb on - strand, within GFF1268 at 585.116 kb on - strand, within GFF1268 at 585.118 kb on + strand, within GFF1268 at 585.118 kb on + strand, within GFF1268 at 585.118 kb on + strand, within GFF1268 at 585.157 kb on + strand, within GFF1268
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 582,820 + GFF1266 0.76 -1.7 582,820 + GFF1266 0.76 -0.3 582,821 - GFF1266 0.76 +0.7 582,821 - GFF1266 0.76 -0.1 582,900 + GFF1266 0.80 -1.8 582,901 - GFF1266 0.80 -0.3 582,901 - GFF1266 0.80 +0.8 582,901 - GFF1266 0.80 +0.4 582,957 + GFF1266 0.84 +1.4 582,958 - GFF1266 0.84 -1.6 582,958 - GFF1266 0.84 -1.8 583,051 - GFF1266 0.89 -1.6 583,179 + -0.1 583,179 + +0.6 583,180 - -1.6 583,782 - GFF1267 0.52 -0.8 583,997 + GFF1267 0.74 -0.2 584,298 - +2.7 584,298 - +0.1 584,340 - +2.1 584,355 + +1.1 584,356 - -2.0 584,804 + GFF1268 0.31 +0.2 584,804 + GFF1268 0.31 -0.1 585,116 - GFF1268 0.54 -0.3 585,116 - GFF1268 0.54 +1.6 585,116 - GFF1268 0.54 +1.7 585,118 + GFF1268 0.54 +1.2 585,118 + GFF1268 0.54 +1.6 585,118 + GFF1268 0.54 -4.8 585,157 + GFF1268 0.57 -1.0
Or see this region's nucleotide sequence