Strain Fitness in Variovorax sp. SCN45 around GFF1196

Experiment: Community=Kojac gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1195 and GFF1196 overlap by 4 nucleotidesGFF1196 and GFF1197 are separated by 84 nucleotides GFF1195 - iron-sulphur protein, at 513,340 to 514,575 GFF1195 GFF1196 - BUG/TctC family periplasmic protein, at 514,572 to 515,579 GFF1196 GFF1197 - Transcriptional regulator, LysR family, at 515,664 to 516,599 GFF1197 Position (kb) 514 515 516Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 513.659 kb on + strand, within GFF1195at 513.659 kb on + strand, within GFF1195at 513.659 kb on + strand, within GFF1195at 513.660 kb on - strand, within GFF1195at 513.660 kb on - strand, within GFF1195at 513.660 kb on - strand, within GFF1195at 513.660 kb on - strand, within GFF1195at 513.660 kb on - strand, within GFF1195at 513.947 kb on + strand, within GFF1195at 513.947 kb on + strand, within GFF1195at 513.947 kb on + strand, within GFF1195at 513.947 kb on + strand, within GFF1195at 513.947 kb on + strand, within GFF1195at 514.052 kb on + strand, within GFF1195at 514.052 kb on + strand, within GFF1195at 514.053 kb on - strand, within GFF1195at 514.091 kb on + strand, within GFF1195at 514.091 kb on + strand, within GFF1195at 514.092 kb on - strand, within GFF1195at 514.092 kb on - strand, within GFF1195at 514.092 kb on - strand, within GFF1195at 514.227 kb on - strand, within GFF1195at 514.227 kb on - strand, within GFF1195at 514.227 kb on - strand, within GFF1195at 514.262 kb on + strand, within GFF1195at 514.262 kb on + strand, within GFF1195at 514.262 kb on + strand, within GFF1195at 514.262 kb on + strand, within GFF1195at 514.262 kb on + strand, within GFF1195at 514.262 kb on + strand, within GFF1195at 514.263 kb on - strand, within GFF1195at 514.263 kb on - strand, within GFF1195at 514.265 kb on + strand, within GFF1195at 514.266 kb on - strand, within GFF1195at 514.412 kb on + strand, within GFF1195at 514.412 kb on + strand, within GFF1195at 514.412 kb on + strand, within GFF1195at 514.413 kb on - strand, within GFF1195at 514.633 kb on + strandat 514.633 kb on + strandat 514.633 kb on + strandat 514.633 kb on + strandat 514.633 kb on + strandat 514.633 kb on + strandat 514.633 kb on + strandat 514.634 kb on - strandat 514.634 kb on - strandat 514.634 kb on - strandat 514.634 kb on - strandat 514.780 kb on + strand, within GFF1196at 514.780 kb on + strand, within GFF1196at 514.780 kb on + strand, within GFF1196at 514.781 kb on - strand, within GFF1196at 514.993 kb on + strand, within GFF1196at 514.993 kb on + strand, within GFF1196at 514.993 kb on + strand, within GFF1196at 514.993 kb on + strand, within GFF1196at 514.994 kb on - strand, within GFF1196at 515.081 kb on - strand, within GFF1196at 515.081 kb on - strand, within GFF1196at 515.081 kb on - strand, within GFF1196at 515.081 kb on - strand, within GFF1196at 515.108 kb on - strand, within GFF1196at 515.108 kb on - strand, within GFF1196at 515.215 kb on + strand, within GFF1196at 515.216 kb on - strand, within GFF1196at 515.216 kb on - strand, within GFF1196at 515.216 kb on - strand, within GFF1196at 515.282 kb on - strand, within GFF1196at 515.393 kb on - strand, within GFF1196at 515.599 kb on + strandat 515.599 kb on + strandat 515.599 kb on + strandat 515.599 kb on + strandat 515.599 kb on + strandat 515.599 kb on + strandat 515.599 kb on + strandat 515.599 kb on + strandat 515.599 kb on + strandat 515.599 kb on + strandat 515.600 kb on - strandat 515.600 kb on - strandat 515.600 kb on - strandat 515.600 kb on - strandat 515.600 kb on - strandat 515.600 kb on - strandat 515.600 kb on - strandat 515.600 kb on - strandat 515.600 kb on - strandat 515.600 kb on - strandat 515.600 kb on - strandat 515.600 kb on - strandat 515.656 kb on + strandat 515.656 kb on + strandat 515.657 kb on - strandat 515.657 kb on - strandat 515.663 kb on + strandat 515.663 kb on + strandat 515.663 kb on + strandat 515.663 kb on + strandat 515.663 kb on + strandat 515.663 kb on + strandat 515.664 kb on - strandat 515.664 kb on - strandat 515.664 kb on - strandat 515.664 kb on - strandat 515.664 kb on - strandat 515.664 kb on - strandat 515.988 kb on + strand, within GFF1197at 516.058 kb on - strand, within GFF1197at 516.058 kb on - strand, within GFF1197at 516.058 kb on - strand, within GFF1197at 516.058 kb on - strand, within GFF1197at 516.058 kb on - strand, within GFF1197at 516.171 kb on + strand, within GFF1197at 516.171 kb on + strand, within GFF1197at 516.171 kb on + strand, within GFF1197at 516.171 kb on + strand, within GFF1197at 516.183 kb on + strand, within GFF1197at 516.183 kb on + strand, within GFF1197at 516.183 kb on + strand, within GFF1197at 516.183 kb on + strand, within GFF1197at 516.183 kb on + strand, within GFF1197at 516.183 kb on + strand, within GFF1197at 516.183 kb on + strand, within GFF1197at 516.184 kb on - strand, within GFF1197at 516.184 kb on - strand, within GFF1197at 516.184 kb on - strand, within GFF1197at 516.184 kb on - strand, within GFF1197

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4
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513,659 + GFF1195 0.26 -1.7
513,659 + GFF1195 0.26 -1.1
513,659 + GFF1195 0.26 -1.3
513,660 - GFF1195 0.26 -1.0
513,660 - GFF1195 0.26 -0.8
513,660 - GFF1195 0.26 -1.0
513,660 - GFF1195 0.26 -1.5
513,660 - GFF1195 0.26 -1.8
513,947 + GFF1195 0.49 -0.9
513,947 + GFF1195 0.49 -0.2
513,947 + GFF1195 0.49 +0.4
513,947 + GFF1195 0.49 -0.1
513,947 + GFF1195 0.49 +0.1
514,052 + GFF1195 0.58 -2.3
514,052 + GFF1195 0.58 -2.3
514,053 - GFF1195 0.58 -0.3
514,091 + GFF1195 0.61 +0.8
514,091 + GFF1195 0.61 +0.2
514,092 - GFF1195 0.61 -0.8
514,092 - GFF1195 0.61 -1.5
514,092 - GFF1195 0.61 +1.1
514,227 - GFF1195 0.72 -3.0
514,227 - GFF1195 0.72 +1.0
514,227 - GFF1195 0.72 -2.2
514,262 + GFF1195 0.75 -1.3
514,262 + GFF1195 0.75 -0.6
514,262 + GFF1195 0.75 -0.2
514,262 + GFF1195 0.75 -1.9
514,262 + GFF1195 0.75 +1.6
514,262 + GFF1195 0.75 +0.2
514,263 - GFF1195 0.75 -2.6
514,263 - GFF1195 0.75 +1.2
514,265 + GFF1195 0.75 +0.5
514,266 - GFF1195 0.75 -0.5
514,412 + GFF1195 0.87 -2.0
514,412 + GFF1195 0.87 +0.8
514,412 + GFF1195 0.87 -0.8
514,413 - GFF1195 0.87 -1.8
514,633 + +0.5
514,633 + +0.3
514,633 + -0.7
514,633 + +1.3
514,633 + -1.6
514,633 + -1.7
514,633 + -0.3
514,634 - -0.9
514,634 - +2.8
514,634 - +0.2
514,634 - -1.5
514,780 + GFF1196 0.21 -0.7
514,780 + GFF1196 0.21 -0.5
514,780 + GFF1196 0.21 -0.5
514,781 - GFF1196 0.21 -2.3
514,993 + GFF1196 0.42 -0.2
514,993 + GFF1196 0.42 +0.6
514,993 + GFF1196 0.42 -0.3
514,993 + GFF1196 0.42 -0.3
514,994 - GFF1196 0.42 -0.3
515,081 - GFF1196 0.50 -1.7
515,081 - GFF1196 0.50 -2.9
515,081 - GFF1196 0.50 +0.2
515,081 - GFF1196 0.50 -3.7
515,108 - GFF1196 0.53 -3.0
515,108 - GFF1196 0.53 -2.6
515,215 + GFF1196 0.64 +0.9
515,216 - GFF1196 0.64 -0.1
515,216 - GFF1196 0.64 -0.8
515,216 - GFF1196 0.64 -0.2
515,282 - GFF1196 0.70 -3.0
515,393 - GFF1196 0.81 +2.5
515,599 + -0.3
515,599 + +0.1
515,599 + -0.7
515,599 + -1.5
515,599 + -1.3
515,599 + +2.8
515,599 + -0.4
515,599 + -0.2
515,599 + -0.5
515,599 + -0.4
515,600 - -1.2
515,600 - +0.8
515,600 - -1.0
515,600 - +0.8
515,600 - +0.4
515,600 - -1.0
515,600 - -0.2
515,600 - +0.8
515,600 - -0.2
515,600 - -0.3
515,600 - +0.5
515,600 - -0.5
515,656 + +0.8
515,656 + -1.5
515,657 - +0.3
515,657 - +1.5
515,663 + +0.3
515,663 + -2.0
515,663 + +1.8
515,663 + -3.1
515,663 + -0.4
515,663 + -3.1
515,664 - +0.6
515,664 - -0.1
515,664 - -2.1
515,664 - -2.0
515,664 - +1.2
515,664 - -0.4
515,988 + GFF1197 0.35 +0.5
516,058 - GFF1197 0.42 -3.2
516,058 - GFF1197 0.42 +1.9
516,058 - GFF1197 0.42 -3.1
516,058 - GFF1197 0.42 -1.7
516,058 - GFF1197 0.42 -2.0
516,171 + GFF1197 0.54 -0.7
516,171 + GFF1197 0.54 -0.7
516,171 + GFF1197 0.54 +0.8
516,171 + GFF1197 0.54 -0.6
516,183 + GFF1197 0.55 -1.4
516,183 + GFF1197 0.55 -1.0
516,183 + GFF1197 0.55 -2.8
516,183 + GFF1197 0.55 -0.7
516,183 + GFF1197 0.55 -2.2
516,183 + GFF1197 0.55 +0.7
516,183 + GFF1197 0.55 +2.0
516,184 - GFF1197 0.56 -1.2
516,184 - GFF1197 0.56 -0.7
516,184 - GFF1197 0.56 +1.5
516,184 - GFF1197 0.56 +0.1

Or see this region's nucleotide sequence