Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1078 and GFF1079 are separated by 95 nucleotides GFF1079 and GFF1080 are separated by 183 nucleotides GFF1080 and GFF1081 are separated by 335 nucleotides
GFF1078 - hypothetical protein, at 389,261 to 389,995
GFF1078
GFF1079 - no description, at 390,091 to 390,342
GFF1079
GFF1080 - no description, at 390,526 to 390,789
GFF1080
GFF1081 - hypothetical protein, at 391,125 to 392,807
GFF1081
Position (kb) 390
391 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 389.105 kb on + strand at 389.105 kb on + strand at 389.105 kb on + strand at 389.106 kb on - strand at 389.106 kb on - strand at 389.106 kb on - strand at 389.106 kb on - strand at 389.106 kb on - strand at 389.106 kb on - strand at 389.108 kb on - strand at 389.108 kb on - strand at 389.108 kb on - strand at 389.228 kb on + strand at 389.229 kb on - strand at 389.259 kb on + strand at 389.259 kb on + strand at 389.259 kb on + strand at 389.259 kb on + strand at 389.259 kb on + strand at 389.260 kb on - strand at 389.260 kb on - strand at 389.260 kb on - strand at 389.260 kb on - strand at 389.262 kb on + strand at 389.262 kb on + strand at 389.262 kb on + strand at 389.263 kb on - strand at 389.263 kb on - strand at 389.263 kb on - strand at 389.266 kb on + strand at 389.266 kb on + strand at 389.266 kb on + strand at 389.266 kb on + strand at 389.266 kb on + strand at 389.266 kb on + strand at 389.267 kb on - strand at 389.267 kb on - strand at 389.267 kb on - strand at 389.267 kb on - strand at 389.267 kb on - strand at 389.279 kb on + strand at 389.280 kb on - strand at 389.371 kb on + strand, within GFF1078 at 389.371 kb on + strand, within GFF1078 at 389.371 kb on + strand, within GFF1078 at 389.371 kb on + strand, within GFF1078 at 389.372 kb on - strand, within GFF1078 at 389.372 kb on - strand, within GFF1078 at 389.372 kb on - strand, within GFF1078 at 389.372 kb on - strand, within GFF1078 at 389.425 kb on - strand, within GFF1078 at 389.425 kb on - strand, within GFF1078 at 389.428 kb on + strand, within GFF1078 at 389.429 kb on - strand, within GFF1078 at 389.429 kb on - strand, within GFF1078 at 389.429 kb on - strand, within GFF1078 at 389.435 kb on + strand, within GFF1078 at 389.436 kb on - strand, within GFF1078 at 389.465 kb on + strand, within GFF1078 at 389.473 kb on - strand, within GFF1078 at 389.556 kb on + strand, within GFF1078 at 389.556 kb on + strand, within GFF1078 at 389.556 kb on + strand, within GFF1078 at 389.557 kb on - strand, within GFF1078 at 389.557 kb on - strand, within GFF1078 at 389.649 kb on + strand, within GFF1078 at 389.650 kb on - strand, within GFF1078 at 389.650 kb on - strand, within GFF1078 at 389.650 kb on - strand, within GFF1078 at 389.678 kb on + strand, within GFF1078 at 389.678 kb on + strand, within GFF1078 at 389.678 kb on + strand, within GFF1078 at 389.678 kb on + strand, within GFF1078 at 389.678 kb on + strand, within GFF1078 at 389.679 kb on - strand, within GFF1078 at 389.679 kb on - strand, within GFF1078 at 389.685 kb on + strand, within GFF1078 at 389.717 kb on + strand, within GFF1078 at 389.717 kb on + strand, within GFF1078 at 389.717 kb on + strand, within GFF1078 at 389.718 kb on - strand, within GFF1078 at 389.724 kb on + strand, within GFF1078 at 389.724 kb on + strand, within GFF1078 at 389.724 kb on + strand, within GFF1078 at 389.724 kb on + strand, within GFF1078 at 389.724 kb on + strand, within GFF1078 at 389.725 kb on - strand, within GFF1078 at 389.725 kb on - strand, within GFF1078 at 389.725 kb on - strand, within GFF1078 at 389.823 kb on + strand, within GFF1078 at 389.823 kb on + strand, within GFF1078 at 389.883 kb on + strand, within GFF1078 at 389.883 kb on + strand, within GFF1078 at 389.883 kb on + strand, within GFF1078 at 389.883 kb on + strand, within GFF1078 at 389.883 kb on + strand, within GFF1078 at 389.884 kb on - strand, within GFF1078 at 389.894 kb on + strand, within GFF1078 at 389.895 kb on - strand, within GFF1078 at 389.895 kb on - strand, within GFF1078 at 389.895 kb on - strand, within GFF1078 at 389.921 kb on + strand, within GFF1078 at 389.922 kb on - strand at 389.947 kb on + strand at 389.947 kb on + strand at 389.947 kb on + strand at 389.947 kb on + strand at 389.947 kb on + strand at 389.948 kb on - strand at 389.948 kb on - strand at 389.948 kb on - strand at 389.948 kb on - strand at 389.948 kb on - strand at 389.948 kb on - strand at 389.948 kb on - strand at 390.022 kb on + strand at 390.036 kb on - strand at 390.116 kb on + strand at 390.117 kb on - strand, within GFF1079 at 390.212 kb on + strand, within GFF1079 at 390.212 kb on + strand, within GFF1079 at 390.212 kb on + strand, within GFF1079 at 390.213 kb on - strand, within GFF1079 at 390.245 kb on + strand, within GFF1079 at 390.245 kb on + strand, within GFF1079 at 390.245 kb on + strand, within GFF1079 at 390.245 kb on + strand, within GFF1079 at 390.246 kb on - strand, within GFF1079 at 390.246 kb on - strand, within GFF1079 at 390.331 kb on - strand at 390.531 kb on + strand at 390.531 kb on + strand at 390.531 kb on + strand at 390.531 kb on + strand at 390.572 kb on + strand, within GFF1080 at 390.573 kb on - strand, within GFF1080 at 390.573 kb on - strand, within GFF1080 at 390.573 kb on - strand, within GFF1080 at 390.573 kb on - strand, within GFF1080 at 390.606 kb on + strand, within GFF1080 at 390.606 kb on + strand, within GFF1080 at 390.607 kb on - strand, within GFF1080 at 390.615 kb on + strand, within GFF1080 at 390.615 kb on + strand, within GFF1080 at 390.806 kb on + strand at 390.806 kb on + strand at 390.820 kb on - strand at 390.820 kb on - strand at 390.834 kb on - strand at 390.918 kb on + strand at 390.918 kb on + strand at 390.919 kb on - strand at 391.037 kb on - strand at 391.039 kb on + strand at 391.040 kb on - strand at 391.102 kb on - strand at 391.102 kb on - strand at 391.119 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 389,105 + -0.3 389,105 + -1.7 389,105 + +0.3 389,106 - -2.6 389,106 - +2.5 389,106 - -0.3 389,106 - -2.0 389,106 - -1.6 389,106 - +0.3 389,108 - -0.2 389,108 - -3.0 389,108 - +1.1 389,228 + -0.5 389,229 - +0.1 389,259 + +0.3 389,259 + -1.3 389,259 + -1.7 389,259 + -0.7 389,259 + -2.6 389,260 - -1.6 389,260 - -2.9 389,260 - +0.5 389,260 - +0.3 389,262 + -1.8 389,262 + +0.2 389,262 + -1.2 389,263 - -1.7 389,263 - -2.3 389,263 - -3.5 389,266 + +0.4 389,266 + +0.3 389,266 + +0.9 389,266 + -0.4 389,266 + +1.9 389,266 + -1.7 389,267 - -0.5 389,267 - -0.5 389,267 - +0.4 389,267 - +1.3 389,267 - -0.7 389,279 + -0.8 389,280 - -1.4 389,371 + GFF1078 0.15 -2.0 389,371 + GFF1078 0.15 -1.0 389,371 + GFF1078 0.15 -0.1 389,371 + GFF1078 0.15 -2.1 389,372 - GFF1078 0.15 +1.0 389,372 - GFF1078 0.15 -1.4 389,372 - GFF1078 0.15 -1.2 389,372 - GFF1078 0.15 +0.3 389,425 - GFF1078 0.22 -1.8 389,425 - GFF1078 0.22 +0.1 389,428 + GFF1078 0.23 -1.1 389,429 - GFF1078 0.23 +2.0 389,429 - GFF1078 0.23 -2.3 389,429 - GFF1078 0.23 -1.1 389,435 + GFF1078 0.24 +0.2 389,436 - GFF1078 0.24 +0.5 389,465 + GFF1078 0.28 +0.0 389,473 - GFF1078 0.29 +1.9 389,556 + GFF1078 0.40 -1.4 389,556 + GFF1078 0.40 -0.5 389,556 + GFF1078 0.40 -0.4 389,557 - GFF1078 0.40 +0.7 389,557 - GFF1078 0.40 +2.3 389,649 + GFF1078 0.53 +1.4 389,650 - GFF1078 0.53 -2.2 389,650 - GFF1078 0.53 -2.8 389,650 - GFF1078 0.53 -0.2 389,678 + GFF1078 0.57 -0.2 389,678 + GFF1078 0.57 -4.1 389,678 + GFF1078 0.57 +1.1 389,678 + GFF1078 0.57 -1.9 389,678 + GFF1078 0.57 -1.1 389,679 - GFF1078 0.57 -1.4 389,679 - GFF1078 0.57 -0.9 389,685 + GFF1078 0.58 +0.3 389,717 + GFF1078 0.62 -1.0 389,717 + GFF1078 0.62 -1.4 389,717 + GFF1078 0.62 -0.5 389,718 - GFF1078 0.62 -2.9 389,724 + GFF1078 0.63 -0.2 389,724 + GFF1078 0.63 -0.1 389,724 + GFF1078 0.63 +1.4 389,724 + GFF1078 0.63 -2.4 389,724 + GFF1078 0.63 -1.4 389,725 - GFF1078 0.63 -1.8 389,725 - GFF1078 0.63 +3.5 389,725 - GFF1078 0.63 -0.1 389,823 + GFF1078 0.76 +2.5 389,823 + GFF1078 0.76 -1.4 389,883 + GFF1078 0.85 +0.9 389,883 + GFF1078 0.85 -0.4 389,883 + GFF1078 0.85 +0.9 389,883 + GFF1078 0.85 -1.8 389,883 + GFF1078 0.85 -2.6 389,884 - GFF1078 0.85 -1.2 389,894 + GFF1078 0.86 +1.1 389,895 - GFF1078 0.86 -0.3 389,895 - GFF1078 0.86 +1.7 389,895 - GFF1078 0.86 -2.1 389,921 + GFF1078 0.90 -1.1 389,922 - -1.3 389,947 + -3.2 389,947 + -1.3 389,947 + -3.1 389,947 + +2.2 389,947 + +0.0 389,948 - -0.0 389,948 - +1.9 389,948 - -0.8 389,948 - -2.4 389,948 - -1.8 389,948 - -2.1 389,948 - +0.1 390,022 + +0.9 390,036 - +1.5 390,116 + -3.0 390,117 - GFF1079 0.10 -2.7 390,212 + GFF1079 0.48 -2.7 390,212 + GFF1079 0.48 -0.3 390,212 + GFF1079 0.48 +0.3 390,213 - GFF1079 0.48 +0.8 390,245 + GFF1079 0.61 -0.1 390,245 + GFF1079 0.61 -1.9 390,245 + GFF1079 0.61 -1.7 390,245 + GFF1079 0.61 -2.0 390,246 - GFF1079 0.62 +0.3 390,246 - GFF1079 0.62 +0.7 390,331 - -1.6 390,531 + +1.2 390,531 + +0.9 390,531 + +0.1 390,531 + +2.3 390,572 + GFF1080 0.17 -0.7 390,573 - GFF1080 0.18 -0.7 390,573 - GFF1080 0.18 -0.7 390,573 - GFF1080 0.18 -0.1 390,573 - GFF1080 0.18 -1.1 390,606 + GFF1080 0.30 -2.1 390,606 + GFF1080 0.30 -1.7 390,607 - GFF1080 0.31 +0.6 390,615 + GFF1080 0.34 -3.3 390,615 + GFF1080 0.34 -2.4 390,806 + -1.9 390,806 + +0.3 390,820 - -0.9 390,820 - -2.3 390,834 - +0.2 390,918 + -3.0 390,918 + +1.0 390,919 - -1.4 391,037 - +1.1 391,039 + +0.6 391,040 - +0.0 391,102 - +0.9 391,102 - -0.7 391,119 + -0.6
Or see this region's nucleotide sequence