Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF106 and GFF107 overlap by 4 nucleotides GFF107 and GFF108 are separated by 68 nucleotides GFF108 and GFF109 are separated by 141 nucleotides
GFF106 - no description, at 133,745 to 134,890
GFF106
GFF107 - General secretion pathway protein K, at 134,887 to 135,846
GFF107
GFF108 - General secretion pathway protein G, at 135,915 to 136,385
GFF108
GFF109 - Protein lysine acetyltransferase Pat (EC 2.3.1.-), at 136,527 to 139,229
GFF109
Position (kb) 134
135
136 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 133.930 kb on - strand, within GFF106 at 134.087 kb on + strand, within GFF106 at 134.088 kb on - strand, within GFF106 at 134.166 kb on + strand, within GFF106 at 134.166 kb on + strand, within GFF106 at 134.167 kb on - strand, within GFF106 at 134.338 kb on + strand, within GFF106 at 134.440 kb on + strand, within GFF106 at 134.440 kb on + strand, within GFF106 at 134.440 kb on + strand, within GFF106 at 134.723 kb on + strand, within GFF106 at 134.723 kb on + strand, within GFF106 at 134.723 kb on + strand, within GFF106 at 134.723 kb on + strand, within GFF106 at 134.777 kb on - strand at 135.623 kb on + strand, within GFF107 at 135.623 kb on + strand, within GFF107 at 136.015 kb on + strand, within GFF108 at 136.016 kb on - strand, within GFF108 at 136.016 kb on - strand, within GFF108 at 136.021 kb on + strand, within GFF108 at 136.138 kb on + strand, within GFF108 at 136.139 kb on - strand, within GFF108
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 133,930 - GFF106 0.16 -1.3 134,087 + GFF106 0.30 -1.6 134,088 - GFF106 0.30 -1.6 134,166 + GFF106 0.37 +0.6 134,166 + GFF106 0.37 -4.1 134,167 - GFF106 0.37 -0.9 134,338 + GFF106 0.52 -1.4 134,440 + GFF106 0.61 +1.0 134,440 + GFF106 0.61 -1.0 134,440 + GFF106 0.61 -1.1 134,723 + GFF106 0.85 -2.1 134,723 + GFF106 0.85 -1.9 134,723 + GFF106 0.85 -2.0 134,723 + GFF106 0.85 +0.0 134,777 - -1.2 135,623 + GFF107 0.77 +2.0 135,623 + GFF107 0.77 -0.5 136,015 + GFF108 0.21 -1.3 136,016 - GFF108 0.21 -1.6 136,016 - GFF108 0.21 -0.7 136,021 + GFF108 0.23 +1.5 136,138 + GFF108 0.47 -2.0 136,139 - GFF108 0.48 -3.8
Or see this region's nucleotide sequence