Experiment: Community=Kojac gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF98 and GFF99 overlap by 1 nucleotides GFF99 and GFF100 overlap by 4 nucleotides GFF100 and GFF101 are separated by 335 nucleotides
GFF98 - Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system, at 123,851 to 124,849
GFF98
GFF99 - KEGG: RNA polymerase sigma-70 factor, ECF subfamily, at 124,849 to 125,409
GFF99
GFF100 - no description, at 125,406 to 126,104
GFF100
GFF101 - Phosphate-binding DING protein (related to PstS), at 126,440 to 127,729
GFF101
Position (kb) 125
126
127 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 124.853 kb on + strand at 124.854 kb on - strand at 124.854 kb on - strand at 125.194 kb on + strand, within GFF99 at 125.194 kb on + strand, within GFF99 at 125.194 kb on + strand, within GFF99 at 125.360 kb on + strand at 125.360 kb on + strand at 125.547 kb on + strand, within GFF100 at 125.548 kb on - strand, within GFF100 at 125.548 kb on - strand, within GFF100 at 125.548 kb on - strand, within GFF100 at 125.548 kb on - strand, within GFF100 at 125.651 kb on - strand, within GFF100 at 125.958 kb on + strand, within GFF100 at 125.958 kb on + strand, within GFF100 at 125.958 kb on + strand, within GFF100 at 125.958 kb on + strand, within GFF100 at 125.958 kb on + strand, within GFF100 at 125.959 kb on - strand, within GFF100 at 125.959 kb on - strand, within GFF100 at 125.984 kb on - strand, within GFF100 at 126.248 kb on - strand at 126.622 kb on - strand, within GFF101 at 126.622 kb on - strand, within GFF101 at 126.622 kb on - strand, within GFF101 at 126.672 kb on + strand, within GFF101 at 126.672 kb on + strand, within GFF101 at 126.672 kb on + strand, within GFF101 at 126.672 kb on + strand, within GFF101 at 126.672 kb on + strand, within GFF101 at 126.672 kb on + strand, within GFF101 at 126.673 kb on - strand, within GFF101 at 126.673 kb on - strand, within GFF101 at 126.673 kb on - strand, within GFF101 at 126.673 kb on - strand, within GFF101 at 126.673 kb on - strand, within GFF101 at 126.673 kb on - strand, within GFF101 at 126.751 kb on - strand, within GFF101 at 126.751 kb on - strand, within GFF101 at 126.888 kb on + strand, within GFF101
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=4 remove 124,853 + +0.1 124,854 - -0.6 124,854 - +0.3 125,194 + GFF99 0.61 +0.6 125,194 + GFF99 0.61 +0.7 125,194 + GFF99 0.61 +2.0 125,360 + -1.1 125,360 + -1.5 125,547 + GFF100 0.20 +0.2 125,548 - GFF100 0.20 +0.2 125,548 - GFF100 0.20 -0.0 125,548 - GFF100 0.20 -2.5 125,548 - GFF100 0.20 -0.6 125,651 - GFF100 0.35 +0.7 125,958 + GFF100 0.79 +0.9 125,958 + GFF100 0.79 -1.5 125,958 + GFF100 0.79 +0.1 125,958 + GFF100 0.79 -2.1 125,958 + GFF100 0.79 -1.5 125,959 - GFF100 0.79 +0.5 125,959 - GFF100 0.79 -0.9 125,984 - GFF100 0.83 -2.0 126,248 - -4.1 126,622 - GFF101 0.14 -2.8 126,622 - GFF101 0.14 +0.4 126,622 - GFF101 0.14 +0.9 126,672 + GFF101 0.18 +0.5 126,672 + GFF101 0.18 -2.4 126,672 + GFF101 0.18 +1.2 126,672 + GFF101 0.18 -1.6 126,672 + GFF101 0.18 -0.3 126,672 + GFF101 0.18 -4.1 126,673 - GFF101 0.18 +0.6 126,673 - GFF101 0.18 -2.3 126,673 - GFF101 0.18 +0.7 126,673 - GFF101 0.18 -1.1 126,673 - GFF101 0.18 -1.3 126,673 - GFF101 0.18 -2.3 126,751 - GFF101 0.24 -1.1 126,751 - GFF101 0.24 -1.9 126,888 + GFF101 0.35 +1.4
Or see this region's nucleotide sequence