Strain Fitness in Variovorax sp. SCN45 around GFF955

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF953 and GFF954 are separated by 193 nucleotidesGFF954 and GFF955 are separated by 32 nucleotidesGFF955 and GFF956 are separated by 231 nucleotidesGFF956 and GFF957 are separated by 40 nucleotides GFF953 - DNA polymerase III epsilon subunit (EC 2.7.7.7), at 266,579 to 267,301 GFF953 GFF954 - hypothetical protein, at 267,495 to 267,839 GFF954 GFF955 - N-acetylmuramoyl-L-alanine amidase, family 2, at 267,872 to 268,474 GFF955 GFF956 - hypothetical protein, at 268,706 to 268,828 GFF956 GFF957 - Aminobutyraldehyde dehydrogenase (EC 1.2.1.19), at 268,869 to 269,978 GFF957 Position (kb) 267 268 269Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 267.244 kb on + strandat 267.244 kb on + strandat 267.244 kb on + strandat 267.328 kb on + strandat 267.497 kb on - strandat 267.497 kb on - strandat 267.497 kb on - strandat 267.527 kb on + strandat 267.528 kb on - strandat 267.528 kb on - strandat 267.541 kb on + strand, within GFF954at 267.541 kb on + strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.542 kb on - strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.637 kb on + strand, within GFF954at 267.638 kb on - strand, within GFF954at 267.638 kb on - strand, within GFF954at 267.638 kb on - strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.655 kb on + strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.656 kb on - strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.676 kb on + strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.677 kb on - strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.787 kb on + strand, within GFF954at 267.788 kb on - strand, within GFF954at 267.788 kb on - strand, within GFF954at 267.873 kb on + strandat 267.873 kb on + strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.874 kb on - strandat 267.882 kb on - strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.912 kb on + strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.913 kb on - strandat 267.933 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.966 kb on + strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 267.967 kb on - strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.023 kb on + strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.024 kb on - strand, within GFF955at 268.087 kb on - strand, within GFF955at 268.194 kb on - strand, within GFF955at 268.239 kb on + strand, within GFF955at 268.239 kb on + strand, within GFF955at 268.239 kb on + strand, within GFF955at 268.239 kb on + strand, within GFF955at 268.240 kb on - strand, within GFF955at 268.240 kb on - strand, within GFF955at 268.240 kb on - strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.251 kb on + strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.252 kb on - strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.269 kb on + strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.270 kb on - strand, within GFF955at 268.427 kb on + strandat 268.428 kb on - strandat 268.428 kb on - strandat 268.531 kb on - strandat 268.531 kb on - strandat 268.572 kb on + strandat 268.610 kb on + strandat 268.610 kb on + strandat 268.610 kb on + strandat 268.610 kb on + strandat 268.610 kb on + strandat 268.610 kb on + strandat 268.611 kb on - strandat 268.611 kb on - strandat 268.611 kb on - strandat 268.679 kb on + strandat 268.679 kb on + strandat 268.679 kb on + strandat 268.679 kb on + strandat 268.679 kb on + strandat 268.679 kb on + strandat 268.679 kb on + strandat 268.680 kb on - strandat 268.680 kb on - strandat 268.680 kb on - strandat 268.680 kb on - strandat 268.680 kb on - strandat 268.680 kb on - strandat 268.858 kb on - strandat 269.031 kb on + strand, within GFF957at 269.031 kb on + strand, within GFF957at 269.031 kb on + strand, within GFF957at 269.031 kb on + strand, within GFF957at 269.031 kb on + strand, within GFF957at 269.031 kb on + strand, within GFF957at 269.031 kb on + strand, within GFF957at 269.031 kb on + strand, within GFF957at 269.031 kb on + strand, within GFF957at 269.031 kb on + strand, within GFF957at 269.031 kb on + strand, within GFF957at 269.031 kb on + strand, within GFF957at 269.031 kb on + strand, within GFF957at 269.031 kb on + strand, within GFF957at 269.031 kb on + strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.032 kb on - strand, within GFF957at 269.088 kb on + strand, within GFF957at 269.088 kb on + strand, within GFF957at 269.088 kb on + strand, within GFF957at 269.088 kb on + strand, within GFF957at 269.088 kb on + strand, within GFF957at 269.088 kb on + strand, within GFF957at 269.088 kb on + strand, within GFF957at 269.088 kb on + strand, within GFF957at 269.088 kb on + strand, within GFF957at 269.088 kb on + strand, within GFF957at 269.088 kb on + strand, within GFF957at 269.089 kb on - strand, within GFF957at 269.089 kb on - strand, within GFF957at 269.089 kb on - strand, within GFF957at 269.089 kb on - strand, within GFF957at 269.089 kb on - strand, within GFF957at 269.089 kb on - strand, within GFF957at 269.089 kb on - strand, within GFF957at 269.089 kb on - strand, within GFF957at 269.089 kb on - strand, within GFF957at 269.089 kb on - strand, within GFF957at 269.094 kb on + strand, within GFF957at 269.094 kb on + strand, within GFF957at 269.094 kb on + strand, within GFF957at 269.094 kb on + strand, within GFF957at 269.094 kb on + strand, within GFF957at 269.094 kb on + strand, within GFF957at 269.095 kb on - strand, within GFF957at 269.095 kb on - strand, within GFF957

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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267,244 + +3.4
267,244 + -1.5
267,244 + -0.3
267,328 + -0.6
267,497 - -0.5
267,497 - +0.7
267,497 - -0.2
267,527 + +0.0
267,528 - +0.4
267,528 - -0.0
267,541 + GFF954 0.13 -2.7
267,541 + GFF954 0.13 -1.5
267,542 - GFF954 0.14 +1.5
267,542 - GFF954 0.14 -1.1
267,542 - GFF954 0.14 -1.9
267,542 - GFF954 0.14 -0.1
267,542 - GFF954 0.14 -1.5
267,637 + GFF954 0.41 -1.6
267,637 + GFF954 0.41 +0.9
267,637 + GFF954 0.41 +0.3
267,637 + GFF954 0.41 -0.3
267,637 + GFF954 0.41 -1.8
267,637 + GFF954 0.41 +0.8
267,637 + GFF954 0.41 +1.1
267,637 + GFF954 0.41 -0.0
267,637 + GFF954 0.41 -1.6
267,637 + GFF954 0.41 +1.3
267,638 - GFF954 0.41 -0.4
267,638 - GFF954 0.41 -0.5
267,638 - GFF954 0.41 -3.0
267,655 + GFF954 0.46 -2.8
267,655 + GFF954 0.46 -1.6
267,655 + GFF954 0.46 +0.6
267,655 + GFF954 0.46 -3.0
267,655 + GFF954 0.46 -0.7
267,655 + GFF954 0.46 -2.6
267,655 + GFF954 0.46 +1.1
267,655 + GFF954 0.46 -2.9
267,655 + GFF954 0.46 -1.5
267,655 + GFF954 0.46 -2.2
267,656 - GFF954 0.47 -0.2
267,656 - GFF954 0.47 -1.4
267,656 - GFF954 0.47 -2.7
267,656 - GFF954 0.47 -1.3
267,656 - GFF954 0.47 -0.5
267,656 - GFF954 0.47 +0.9
267,656 - GFF954 0.47 -1.4
267,656 - GFF954 0.47 -0.5
267,656 - GFF954 0.47 +1.0
267,656 - GFF954 0.47 -0.2
267,656 - GFF954 0.47 -1.7
267,656 - GFF954 0.47 -1.8
267,656 - GFF954 0.47 -2.1
267,656 - GFF954 0.47 -1.9
267,676 + GFF954 0.52 -0.3
267,676 + GFF954 0.52 -0.6
267,676 + GFF954 0.52 -0.5
267,676 + GFF954 0.52 -4.5
267,676 + GFF954 0.52 -0.9
267,676 + GFF954 0.52 -2.3
267,676 + GFF954 0.52 +0.8
267,676 + GFF954 0.52 +1.2
267,676 + GFF954 0.52 -0.0
267,676 + GFF954 0.52 -1.1
267,676 + GFF954 0.52 +0.6
267,677 - GFF954 0.53 -2.0
267,677 - GFF954 0.53 -1.2
267,677 - GFF954 0.53 -1.5
267,677 - GFF954 0.53 +3.1
267,677 - GFF954 0.53 -1.7
267,677 - GFF954 0.53 +0.8
267,677 - GFF954 0.53 +0.8
267,677 - GFF954 0.53 -0.5
267,677 - GFF954 0.53 +2.4
267,677 - GFF954 0.53 +0.3
267,787 + GFF954 0.85 -0.5
267,787 + GFF954 0.85 -0.6
267,787 + GFF954 0.85 +0.5
267,787 + GFF954 0.85 +2.7
267,787 + GFF954 0.85 +1.7
267,787 + GFF954 0.85 +3.4
267,788 - GFF954 0.85 -0.5
267,788 - GFF954 0.85 +0.6
267,873 + -0.4
267,873 + -2.3
267,874 - +0.4
267,874 - -2.3
267,874 - -1.7
267,874 - +1.4
267,874 - -1.2
267,874 - +1.8
267,882 - +0.6
267,912 + -0.7
267,912 + +0.3
267,912 + +0.8
267,912 + -1.3
267,912 + +0.4
267,912 + -2.0
267,912 + -1.0
267,912 + -1.2
267,912 + -1.7
267,912 + -1.5
267,912 + +1.8
267,913 - +1.0
267,913 - -0.3
267,913 - +1.2
267,913 - +1.0
267,913 - +1.2
267,913 - -1.0
267,933 + GFF955 0.10 -0.5
267,966 + GFF955 0.16 -1.3
267,966 + GFF955 0.16 +1.8
267,966 + GFF955 0.16 +0.3
267,966 + GFF955 0.16 +1.2
267,966 + GFF955 0.16 +0.8
267,966 + GFF955 0.16 +0.8
267,966 + GFF955 0.16 -1.0
267,966 + GFF955 0.16 -1.9
267,966 + GFF955 0.16 -1.5
267,966 + GFF955 0.16 -2.4
267,966 + GFF955 0.16 +0.7
267,966 + GFF955 0.16 +0.6
267,966 + GFF955 0.16 -0.4
267,966 + GFF955 0.16 -0.9
267,966 + GFF955 0.16 -0.1
267,967 - GFF955 0.16 +0.2
267,967 - GFF955 0.16 -2.9
267,967 - GFF955 0.16 -1.0
267,967 - GFF955 0.16 +1.0
267,967 - GFF955 0.16 -1.2
267,967 - GFF955 0.16 -3.2
267,967 - GFF955 0.16 +2.4
267,967 - GFF955 0.16 +0.8
268,023 + GFF955 0.25 -1.3
268,023 + GFF955 0.25 -1.0
268,023 + GFF955 0.25 -2.2
268,023 + GFF955 0.25 -2.7
268,023 + GFF955 0.25 -0.2
268,023 + GFF955 0.25 +1.5
268,023 + GFF955 0.25 -1.3
268,023 + GFF955 0.25 -2.9
268,024 - GFF955 0.25 -1.7
268,024 - GFF955 0.25 -0.5
268,024 - GFF955 0.25 +2.0
268,024 - GFF955 0.25 +0.5
268,024 - GFF955 0.25 -1.6
268,024 - GFF955 0.25 +0.5
268,087 - GFF955 0.36 -1.7
268,194 - GFF955 0.53 -0.5
268,239 + GFF955 0.61 -1.0
268,239 + GFF955 0.61 -1.3
268,239 + GFF955 0.61 +0.2
268,239 + GFF955 0.61 -2.3
268,240 - GFF955 0.61 +1.1
268,240 - GFF955 0.61 +1.0
268,240 - GFF955 0.61 +1.1
268,251 + GFF955 0.63 -0.7
268,251 + GFF955 0.63 -2.3
268,251 + GFF955 0.63 +1.1
268,251 + GFF955 0.63 -0.2
268,251 + GFF955 0.63 +1.1
268,252 - GFF955 0.63 -0.2
268,252 - GFF955 0.63 +1.1
268,252 - GFF955 0.63 -0.9
268,252 - GFF955 0.63 +0.5
268,252 - GFF955 0.63 -4.0
268,252 - GFF955 0.63 +0.3
268,252 - GFF955 0.63 +2.2
268,252 - GFF955 0.63 -1.0
268,269 + GFF955 0.66 +2.0
268,269 + GFF955 0.66 -0.5
268,269 + GFF955 0.66 -1.3
268,269 + GFF955 0.66 +0.6
268,269 + GFF955 0.66 -1.5
268,269 + GFF955 0.66 -3.6
268,270 - GFF955 0.66 +0.3
268,270 - GFF955 0.66 +1.9
268,270 - GFF955 0.66 -1.6
268,270 - GFF955 0.66 +1.2
268,270 - GFF955 0.66 -3.3
268,270 - GFF955 0.66 -1.4
268,427 + -0.5
268,428 - -1.9
268,428 - -1.0
268,531 - +1.8
268,531 - -2.9
268,572 + +3.7
268,610 + -2.0
268,610 + +1.6
268,610 + +0.3
268,610 + +0.1
268,610 + -1.7
268,610 + +1.1
268,611 - -1.0
268,611 - +1.8
268,611 - +3.0
268,679 + +0.9
268,679 + -3.3
268,679 + +0.9
268,679 + -1.3
268,679 + +0.1
268,679 + -1.3
268,679 + -0.3
268,680 - -1.8
268,680 - -0.2
268,680 - -0.2
268,680 - +0.7
268,680 - -1.3
268,680 - -3.0
268,858 - -0.7
269,031 + GFF957 0.15 -1.7
269,031 + GFF957 0.15 -2.6
269,031 + GFF957 0.15 +1.8
269,031 + GFF957 0.15 -1.7
269,031 + GFF957 0.15 +2.0
269,031 + GFF957 0.15 -1.2
269,031 + GFF957 0.15 -0.5
269,031 + GFF957 0.15 -2.4
269,031 + GFF957 0.15 -2.4
269,031 + GFF957 0.15 +1.0
269,031 + GFF957 0.15 -2.0
269,031 + GFF957 0.15 +1.8
269,031 + GFF957 0.15 +1.1
269,031 + GFF957 0.15 -0.3
269,031 + GFF957 0.15 +2.6
269,032 - GFF957 0.15 +1.3
269,032 - GFF957 0.15 -2.3
269,032 - GFF957 0.15 -1.3
269,032 - GFF957 0.15 -0.3
269,032 - GFF957 0.15 +0.5
269,032 - GFF957 0.15 +0.3
269,032 - GFF957 0.15 +4.5
269,032 - GFF957 0.15 -3.0
269,032 - GFF957 0.15 -2.3
269,032 - GFF957 0.15 +0.8
269,032 - GFF957 0.15 +0.5
269,032 - GFF957 0.15 -0.0
269,032 - GFF957 0.15 -1.0
269,032 - GFF957 0.15 -1.0
269,032 - GFF957 0.15 -0.6
269,032 - GFF957 0.15 -0.8
269,032 - GFF957 0.15 -3.0
269,032 - GFF957 0.15 +0.2
269,088 + GFF957 0.20 -0.9
269,088 + GFF957 0.20 +0.5
269,088 + GFF957 0.20 -2.7
269,088 + GFF957 0.20 -0.1
269,088 + GFF957 0.20 -3.1
269,088 + GFF957 0.20 -0.9
269,088 + GFF957 0.20 +0.3
269,088 + GFF957 0.20 +0.7
269,088 + GFF957 0.20 -2.3
269,088 + GFF957 0.20 +0.4
269,088 + GFF957 0.20 -1.5
269,089 - GFF957 0.20 -2.4
269,089 - GFF957 0.20 -1.5
269,089 - GFF957 0.20 -2.9
269,089 - GFF957 0.20 +0.7
269,089 - GFF957 0.20 -0.5
269,089 - GFF957 0.20 +1.4
269,089 - GFF957 0.20 -1.2
269,089 - GFF957 0.20 -0.8
269,089 - GFF957 0.20 -3.7
269,089 - GFF957 0.20 -0.6
269,094 + GFF957 0.20 -0.5
269,094 + GFF957 0.20 -2.2
269,094 + GFF957 0.20 -1.0
269,094 + GFF957 0.20 +1.8
269,094 + GFF957 0.20 -1.7
269,094 + GFF957 0.20 -0.1
269,095 - GFF957 0.20 +0.8
269,095 - GFF957 0.20 +1.4

Or see this region's nucleotide sequence