Strain Fitness in Variovorax sp. SCN45 around GFF927

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF925 and GFF926 are separated by 46 nucleotidesGFF926 and GFF927 overlap by 4 nucleotidesGFF927 and GFF928 are separated by 155 nucleotides GFF925 - hypothetical protein, at 237,279 to 238,058 GFF925 GFF926 - Transcriptional regulator, AcrR family, at 238,105 to 238,785 GFF926 GFF927 - Acyl-CoA dehydrogenase, at 238,782 to 240,494 GFF927 GFF928 - tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91), at 240,650 to 241,630 GFF928 Position (kb) 238 239 240 241Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 237.867 kb on + strand, within GFF925at 237.867 kb on + strand, within GFF925at 237.867 kb on + strand, within GFF925at 237.867 kb on + strand, within GFF925at 237.867 kb on + strand, within GFF925at 237.868 kb on - strand, within GFF925at 237.868 kb on - strand, within GFF925at 237.868 kb on - strand, within GFF925at 237.868 kb on - strand, within GFF925at 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.014 kb on + strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.015 kb on - strandat 238.111 kb on + strandat 238.112 kb on - strandat 238.112 kb on - strandat 238.261 kb on + strand, within GFF926at 238.262 kb on - strand, within GFF926at 238.262 kb on - strand, within GFF926at 238.262 kb on - strand, within GFF926at 238.262 kb on - strand, within GFF926at 238.267 kb on + strand, within GFF926at 238.267 kb on + strand, within GFF926at 238.267 kb on + strand, within GFF926at 238.268 kb on - strand, within GFF926at 238.436 kb on - strand, within GFF926at 238.489 kb on + strand, within GFF926at 238.489 kb on + strand, within GFF926at 238.514 kb on + strand, within GFF926at 238.514 kb on + strand, within GFF926at 238.515 kb on - strand, within GFF926at 238.669 kb on + strand, within GFF926at 238.669 kb on + strand, within GFF926at 238.669 kb on + strand, within GFF926at 238.669 kb on + strand, within GFF926at 238.670 kb on - strand, within GFF926at 238.830 kb on + strandat 238.830 kb on + strandat 238.830 kb on + strandat 238.831 kb on - strandat 239.181 kb on + strand, within GFF927at 239.181 kb on + strand, within GFF927at 239.181 kb on + strand, within GFF927at 239.181 kb on + strand, within GFF927at 239.182 kb on - strand, within GFF927at 239.232 kb on + strand, within GFF927at 239.232 kb on + strand, within GFF927at 239.232 kb on + strand, within GFF927at 239.233 kb on - strand, within GFF927at 239.233 kb on - strand, within GFF927at 239.233 kb on - strand, within GFF927at 239.233 kb on - strand, within GFF927at 239.233 kb on - strand, within GFF927at 239.304 kb on + strand, within GFF927at 239.304 kb on + strand, within GFF927at 239.304 kb on + strand, within GFF927at 239.304 kb on + strand, within GFF927at 239.304 kb on + strand, within GFF927at 239.304 kb on + strand, within GFF927at 239.304 kb on + strand, within GFF927at 239.305 kb on - strand, within GFF927at 239.305 kb on - strand, within GFF927at 239.356 kb on - strand, within GFF927at 239.434 kb on - strand, within GFF927at 239.458 kb on - strand, within GFF927at 239.458 kb on - strand, within GFF927at 239.652 kb on + strand, within GFF927at 239.652 kb on + strand, within GFF927at 239.652 kb on + strand, within GFF927at 239.653 kb on - strand, within GFF927at 239.653 kb on - strand, within GFF927at 239.653 kb on - strand, within GFF927at 240.561 kb on + strandat 240.562 kb on + strandat 240.563 kb on - strandat 240.563 kb on - strandat 240.563 kb on - strandat 240.563 kb on - strandat 240.563 kb on - strandat 240.563 kb on - strandat 240.628 kb on + strandat 240.632 kb on + strandat 240.636 kb on - strandat 240.637 kb on + strandat 240.637 kb on + strandat 240.637 kb on + strandat 240.638 kb on - strandat 240.638 kb on - strandat 240.638 kb on - strandat 240.638 kb on - strandat 240.643 kb on + strandat 240.643 kb on + strandat 240.643 kb on + strandat 240.643 kb on + strandat 240.643 kb on + strandat 240.644 kb on - strandat 240.644 kb on - strandat 240.644 kb on - strandat 240.644 kb on - strandat 240.644 kb on - strandat 240.644 kb on - strandat 240.644 kb on - strandat 240.716 kb on + strandat 240.717 kb on - strandat 240.717 kb on - strandat 240.717 kb on - strandat 240.752 kb on + strand, within GFF928at 240.752 kb on + strand, within GFF928at 240.752 kb on + strand, within GFF928at 240.752 kb on + strand, within GFF928at 240.753 kb on - strand, within GFF928at 240.753 kb on - strand, within GFF928at 240.753 kb on - strand, within GFF928at 240.753 kb on - strand, within GFF928at 240.783 kb on + strand, within GFF928at 240.784 kb on - strand, within GFF928at 240.784 kb on - strand, within GFF928at 240.784 kb on - strand, within GFF928at 240.795 kb on + strand, within GFF928at 240.795 kb on + strand, within GFF928at 240.796 kb on - strand, within GFF928at 240.796 kb on - strand, within GFF928at 240.905 kb on + strand, within GFF928at 240.905 kb on + strand, within GFF928at 240.905 kb on + strand, within GFF928at 240.906 kb on - strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.082 kb on + strand, within GFF928at 241.083 kb on - strand, within GFF928at 241.083 kb on - strand, within GFF928at 241.083 kb on - strand, within GFF928at 241.211 kb on + strand, within GFF928at 241.343 kb on + strand, within GFF928at 241.343 kb on + strand, within GFF928at 241.343 kb on + strand, within GFF928at 241.343 kb on + strand, within GFF928at 241.344 kb on - strand, within GFF928at 241.344 kb on - strand, within GFF928at 241.385 kb on + strand, within GFF928at 241.386 kb on - strand, within GFF928at 241.386 kb on - strand, within GFF928at 241.386 kb on - strand, within GFF928at 241.442 kb on + strand, within GFF928at 241.442 kb on + strand, within GFF928at 241.442 kb on + strand, within GFF928at 241.442 kb on + strand, within GFF928at 241.442 kb on + strand, within GFF928at 241.442 kb on + strand, within GFF928at 241.442 kb on + strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928at 241.443 kb on - strand, within GFF928

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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237,867 + GFF925 0.75 -3.0
237,867 + GFF925 0.75 +0.2
237,867 + GFF925 0.75 -2.2
237,867 + GFF925 0.75 -2.9
237,867 + GFF925 0.75 +0.5
237,868 - GFF925 0.76 -1.3
237,868 - GFF925 0.76 -0.5
237,868 - GFF925 0.76 -1.0
237,868 - GFF925 0.76 -0.2
238,014 + -2.9
238,014 + -0.2
238,014 + +1.5
238,014 + -4.3
238,014 + -1.9
238,014 + +0.3
238,014 + -1.0
238,014 + +1.2
238,014 + -0.5
238,014 + +0.5
238,014 + +0.1
238,014 + -2.7
238,014 + -0.2
238,014 + -1.5
238,014 + +1.5
238,014 + -1.6
238,014 + +0.1
238,014 + -0.4
238,015 - -2.3
238,015 - -1.2
238,015 - -2.6
238,015 - +1.3
238,015 - -2.0
238,015 - +0.1
238,015 - +1.6
238,015 - -0.7
238,015 - -1.5
238,015 - +1.1
238,015 - -0.2
238,015 - +0.7
238,015 - +0.9
238,111 + -1.7
238,112 - -1.2
238,112 - -0.5
238,261 + GFF926 0.23 -0.1
238,262 - GFF926 0.23 +0.3
238,262 - GFF926 0.23 -0.2
238,262 - GFF926 0.23 +0.3
238,262 - GFF926 0.23 -2.5
238,267 + GFF926 0.24 +1.7
238,267 + GFF926 0.24 +0.1
238,267 + GFF926 0.24 +2.2
238,268 - GFF926 0.24 +0.4
238,436 - GFF926 0.49 -1.2
238,489 + GFF926 0.56 -0.6
238,489 + GFF926 0.56 -1.6
238,514 + GFF926 0.60 +0.1
238,514 + GFF926 0.60 -1.7
238,515 - GFF926 0.60 +0.2
238,669 + GFF926 0.83 -1.2
238,669 + GFF926 0.83 -2.5
238,669 + GFF926 0.83 -0.2
238,669 + GFF926 0.83 +1.8
238,670 - GFF926 0.83 -0.9
238,830 + -0.7
238,830 + -0.4
238,830 + +0.9
238,831 - +1.2
239,181 + GFF927 0.23 -2.3
239,181 + GFF927 0.23 -2.3
239,181 + GFF927 0.23 -1.0
239,181 + GFF927 0.23 -1.6
239,182 - GFF927 0.23 -0.9
239,232 + GFF927 0.26 -1.0
239,232 + GFF927 0.26 -0.9
239,232 + GFF927 0.26 -0.3
239,233 - GFF927 0.26 -1.0
239,233 - GFF927 0.26 -0.1
239,233 - GFF927 0.26 +2.3
239,233 - GFF927 0.26 -1.7
239,233 - GFF927 0.26 +0.8
239,304 + GFF927 0.30 -3.5
239,304 + GFF927 0.30 -0.5
239,304 + GFF927 0.30 +2.8
239,304 + GFF927 0.30 +0.7
239,304 + GFF927 0.30 +0.9
239,304 + GFF927 0.30 -0.6
239,304 + GFF927 0.30 -0.6
239,305 - GFF927 0.31 +0.5
239,305 - GFF927 0.31 -0.6
239,356 - GFF927 0.34 -0.5
239,434 - GFF927 0.38 +0.4
239,458 - GFF927 0.39 +1.5
239,458 - GFF927 0.39 -1.7
239,652 + GFF927 0.51 +1.5
239,652 + GFF927 0.51 -3.0
239,652 + GFF927 0.51 -0.7
239,653 - GFF927 0.51 -1.6
239,653 - GFF927 0.51 -0.0
239,653 - GFF927 0.51 -1.2
240,561 + +1.0
240,562 + +1.8
240,563 - -0.9
240,563 - +0.7
240,563 - +0.6
240,563 - -0.7
240,563 - -0.4
240,563 - +1.2
240,628 + -0.5
240,632 + +0.5
240,636 - -2.2
240,637 + -2.2
240,637 + +0.7
240,637 + +2.1
240,638 - +0.6
240,638 - +1.9
240,638 - -1.8
240,638 - +1.7
240,643 + -0.2
240,643 + -1.0
240,643 + +1.2
240,643 + -0.2
240,643 + -2.8
240,644 - -0.9
240,644 - -0.2
240,644 - -0.2
240,644 - +1.0
240,644 - +0.5
240,644 - -1.6
240,644 - -0.1
240,716 + -3.4
240,717 - -1.7
240,717 - +0.9
240,717 - -1.6
240,752 + GFF928 0.10 -0.3
240,752 + GFF928 0.10 -0.4
240,752 + GFF928 0.10 -1.0
240,752 + GFF928 0.10 +1.3
240,753 - GFF928 0.10 +0.3
240,753 - GFF928 0.10 -1.6
240,753 - GFF928 0.10 -3.6
240,753 - GFF928 0.10 +0.3
240,783 + GFF928 0.14 -0.9
240,784 - GFF928 0.14 -0.7
240,784 - GFF928 0.14 -1.3
240,784 - GFF928 0.14 -3.6
240,795 + GFF928 0.15 -2.6
240,795 + GFF928 0.15 +1.3
240,796 - GFF928 0.15 -0.5
240,796 - GFF928 0.15 -0.6
240,905 + GFF928 0.26 +1.3
240,905 + GFF928 0.26 +0.3
240,905 + GFF928 0.26 +0.1
240,906 - GFF928 0.26 -1.0
241,082 + GFF928 0.44 -0.3
241,082 + GFF928 0.44 -2.0
241,082 + GFF928 0.44 +0.8
241,082 + GFF928 0.44 +0.6
241,082 + GFF928 0.44 +0.0
241,082 + GFF928 0.44 -1.0
241,082 + GFF928 0.44 -2.6
241,082 + GFF928 0.44 -1.9
241,083 - GFF928 0.44 +0.2
241,083 - GFF928 0.44 -1.0
241,083 - GFF928 0.44 -0.7
241,211 + GFF928 0.57 -1.2
241,343 + GFF928 0.71 -0.2
241,343 + GFF928 0.71 -3.5
241,343 + GFF928 0.71 -2.3
241,343 + GFF928 0.71 -0.4
241,344 - GFF928 0.71 -1.1
241,344 - GFF928 0.71 -0.5
241,385 + GFF928 0.75 -1.4
241,386 - GFF928 0.75 -0.2
241,386 - GFF928 0.75 -2.2
241,386 - GFF928 0.75 -0.2
241,442 + GFF928 0.81 -2.3
241,442 + GFF928 0.81 +0.6
241,442 + GFF928 0.81 -0.4
241,442 + GFF928 0.81 -2.6
241,442 + GFF928 0.81 -2.5
241,442 + GFF928 0.81 -0.5
241,442 + GFF928 0.81 -0.1
241,443 - GFF928 0.81 -0.9
241,443 - GFF928 0.81 -0.8
241,443 - GFF928 0.81 -1.1
241,443 - GFF928 0.81 -1.3
241,443 - GFF928 0.81 +0.7
241,443 - GFF928 0.81 -1.2
241,443 - GFF928 0.81 -1.6
241,443 - GFF928 0.81 -3.3
241,443 - GFF928 0.81 +0.1
241,443 - GFF928 0.81 +0.7

Or see this region's nucleotide sequence