Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF838 and GFF839 are separated by 317 nucleotides GFF839 and GFF840 overlap by 4 nucleotides GFF840 and GFF841 are separated by 11 nucleotides
GFF838 - hypothetical protein, at 143,452 to 144,552
GFF838
GFF839 - Retron-type RNA-directed DNA polymerase (EC 2.7.7.49), at 144,870 to 146,816
GFF839
GFF840 - no description, at 146,813 to 147,082
GFF840
GFF841 - zinc finger, SWIM-type, at 147,094 to 148,800
GFF841
Position (kb) 144
145
146
147 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 144.269 kb on + strand, within GFF838 at 144.531 kb on - strand at 144.599 kb on + strand at 144.763 kb on + strand at 144.763 kb on + strand at 144.763 kb on + strand at 144.764 kb on - strand at 144.783 kb on + strand at 144.784 kb on - strand at 145.036 kb on + strand at 145.036 kb on + strand at 145.036 kb on + strand at 145.036 kb on + strand at 145.036 kb on + strand at 145.037 kb on - strand at 145.037 kb on - strand at 145.037 kb on - strand at 145.037 kb on - strand at 145.427 kb on - strand, within GFF839 at 145.427 kb on - strand, within GFF839 at 145.778 kb on - strand, within GFF839 at 145.903 kb on + strand, within GFF839 at 145.904 kb on - strand, within GFF839 at 146.176 kb on + strand, within GFF839 at 146.435 kb on - strand, within GFF839 at 146.435 kb on - strand, within GFF839 at 146.919 kb on - strand, within GFF840 at 146.981 kb on + strand, within GFF840 at 147.092 kb on + strand at 147.092 kb on + strand at 147.092 kb on + strand at 147.503 kb on + strand, within GFF841 at 147.504 kb on - strand, within GFF841 at 147.504 kb on - strand, within GFF841 at 147.527 kb on + strand, within GFF841
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 144,269 + GFF838 0.74 -0.2 144,531 - -0.9 144,599 + -1.0 144,763 + +0.4 144,763 + -1.7 144,763 + +0.0 144,764 - +1.3 144,783 + +1.5 144,784 - -0.0 145,036 + -1.7 145,036 + +1.8 145,036 + -0.7 145,036 + +0.3 145,036 + -0.6 145,037 - -0.2 145,037 - -1.2 145,037 - +0.5 145,037 - -1.6 145,427 - GFF839 0.29 -1.4 145,427 - GFF839 0.29 -2.0 145,778 - GFF839 0.47 -0.5 145,903 + GFF839 0.53 +1.2 145,904 - GFF839 0.53 -0.2 146,176 + GFF839 0.67 -1.1 146,435 - GFF839 0.80 +0.1 146,435 - GFF839 0.80 -1.5 146,919 - GFF840 0.39 +2.0 146,981 + GFF840 0.62 +0.2 147,092 + +0.2 147,092 + -2.9 147,092 + -1.3 147,503 + GFF841 0.24 +1.2 147,504 - GFF841 0.24 +0.8 147,504 - GFF841 0.24 +0.8 147,527 + GFF841 0.25 +1.5
Or see this region's nucleotide sequence