Strain Fitness in Variovorax sp. SCN45 around GFF816

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF814 and GFF815 overlap by 4 nucleotidesGFF815 and GFF816 are separated by 16 nucleotidesGFF816 and GFF817 overlap by 4 nucleotidesGFF817 and GFF818 are separated by 32 nucleotides GFF814 - BUG/TctC family periplasmic protein, at 119,392 to 120,372 GFF814 GFF815 - COGs COG3777, at 120,369 to 121,286 GFF815 GFF816 - L-carnitine dehydratase/bile acid-inducible protein F, at 121,303 to 122,484 GFF816 GFF817 - Similar to citrate lyase beta chain, 3, at 122,481 to 123,359 GFF817 GFF818 - BUG/TctC family periplasmic protein, at 123,392 to 124,402 GFF818 Position (kb) 121 122 123Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 120.982 kb on - strand, within GFF815at 121.018 kb on - strand, within GFF815at 121.018 kb on - strand, within GFF815at 121.030 kb on - strand, within GFF815at 121.030 kb on - strand, within GFF815at 121.293 kb on + strandat 121.293 kb on + strandat 121.294 kb on - strandat 121.678 kb on + strand, within GFF816at 121.679 kb on - strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.714 kb on + strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.715 kb on - strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.819 kb on + strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.820 kb on - strand, within GFF816at 121.825 kb on + strand, within GFF816at 121.825 kb on + strand, within GFF816at 121.825 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.933 kb on + strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.934 kb on - strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.936 kb on + strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.937 kb on - strand, within GFF816at 121.942 kb on + strand, within GFF816at 121.942 kb on + strand, within GFF816at 121.943 kb on - strand, within GFF816at 121.943 kb on - strand, within GFF816at 121.993 kb on + strand, within GFF816at 121.993 kb on + strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.994 kb on - strand, within GFF816at 121.999 kb on + strand, within GFF816at 122.000 kb on - strand, within GFF816at 122.375 kb on - strandat 123.366 kb on + strandat 123.366 kb on + strandat 123.366 kb on + strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.367 kb on - strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.378 kb on + strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strandat 123.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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120,982 - GFF815 0.67 -2.5
121,018 - GFF815 0.71 -0.2
121,018 - GFF815 0.71 -1.3
121,030 - GFF815 0.72 +1.1
121,030 - GFF815 0.72 -0.2
121,293 + +0.3
121,293 + -2.8
121,294 - -0.7
121,678 + GFF816 0.32 -1.3
121,679 - GFF816 0.32 -3.1
121,714 + GFF816 0.35 -4.0
121,714 + GFF816 0.35 +1.4
121,714 + GFF816 0.35 -2.6
121,714 + GFF816 0.35 -1.3
121,714 + GFF816 0.35 -0.2
121,714 + GFF816 0.35 -2.9
121,714 + GFF816 0.35 -1.0
121,714 + GFF816 0.35 -1.5
121,714 + GFF816 0.35 -3.4
121,714 + GFF816 0.35 -3.2
121,714 + GFF816 0.35 -0.2
121,714 + GFF816 0.35 -0.2
121,714 + GFF816 0.35 -0.3
121,714 + GFF816 0.35 -2.3
121,714 + GFF816 0.35 -0.1
121,715 - GFF816 0.35 +1.8
121,715 - GFF816 0.35 -0.2
121,715 - GFF816 0.35 -0.2
121,715 - GFF816 0.35 +0.4
121,715 - GFF816 0.35 +1.7
121,715 - GFF816 0.35 -0.0
121,715 - GFF816 0.35 -1.0
121,819 + GFF816 0.44 -2.3
121,819 + GFF816 0.44 -1.5
121,819 + GFF816 0.44 -3.8
121,819 + GFF816 0.44 +1.5
121,819 + GFF816 0.44 +0.3
121,819 + GFF816 0.44 +0.7
121,819 + GFF816 0.44 -1.0
121,819 + GFF816 0.44 -0.3
121,819 + GFF816 0.44 -1.9
121,819 + GFF816 0.44 -0.6
121,819 + GFF816 0.44 -3.0
121,819 + GFF816 0.44 +1.3
121,819 + GFF816 0.44 -0.5
121,819 + GFF816 0.44 -0.7
121,819 + GFF816 0.44 -1.2
121,819 + GFF816 0.44 -2.5
121,819 + GFF816 0.44 -1.1
121,819 + GFF816 0.44 -0.1
121,819 + GFF816 0.44 -0.7
121,819 + GFF816 0.44 -0.5
121,819 + GFF816 0.44 -2.7
121,819 + GFF816 0.44 -2.8
121,819 + GFF816 0.44 +0.3
121,820 - GFF816 0.44 -0.7
121,820 - GFF816 0.44 +1.6
121,820 - GFF816 0.44 -0.4
121,820 - GFF816 0.44 -1.6
121,820 - GFF816 0.44 +1.5
121,820 - GFF816 0.44 +0.2
121,820 - GFF816 0.44 +0.4
121,820 - GFF816 0.44 -1.6
121,820 - GFF816 0.44 +0.3
121,820 - GFF816 0.44 +1.6
121,820 - GFF816 0.44 -0.7
121,820 - GFF816 0.44 -1.3
121,820 - GFF816 0.44 +1.8
121,820 - GFF816 0.44 -1.2
121,825 + GFF816 0.44 -0.7
121,825 + GFF816 0.44 +1.8
121,825 + GFF816 0.44 -0.5
121,933 + GFF816 0.53 -0.2
121,933 + GFF816 0.53 -1.6
121,933 + GFF816 0.53 -1.1
121,933 + GFF816 0.53 -1.4
121,933 + GFF816 0.53 +2.8
121,933 + GFF816 0.53 -2.6
121,933 + GFF816 0.53 +1.3
121,934 - GFF816 0.53 -0.5
121,934 - GFF816 0.53 +0.7
121,934 - GFF816 0.53 -1.5
121,934 - GFF816 0.53 -0.7
121,934 - GFF816 0.53 +0.4
121,934 - GFF816 0.53 -0.7
121,934 - GFF816 0.53 -0.0
121,934 - GFF816 0.53 -0.7
121,934 - GFF816 0.53 +1.4
121,934 - GFF816 0.53 +0.8
121,934 - GFF816 0.53 -1.5
121,934 - GFF816 0.53 -2.6
121,934 - GFF816 0.53 +0.3
121,936 + GFF816 0.54 +0.3
121,936 + GFF816 0.54 -1.5
121,936 + GFF816 0.54 -0.3
121,936 + GFF816 0.54 -1.9
121,936 + GFF816 0.54 -0.9
121,936 + GFF816 0.54 -1.2
121,936 + GFF816 0.54 +0.6
121,936 + GFF816 0.54 -0.6
121,936 + GFF816 0.54 -0.2
121,937 - GFF816 0.54 -1.7
121,937 - GFF816 0.54 -1.6
121,937 - GFF816 0.54 -0.3
121,937 - GFF816 0.54 -0.2
121,937 - GFF816 0.54 -1.0
121,937 - GFF816 0.54 -3.2
121,937 - GFF816 0.54 -1.5
121,942 + GFF816 0.54 -1.6
121,942 + GFF816 0.54 -1.0
121,943 - GFF816 0.54 -1.2
121,943 - GFF816 0.54 -1.6
121,993 + GFF816 0.58 +0.1
121,993 + GFF816 0.58 -1.6
121,994 - GFF816 0.58 -1.5
121,994 - GFF816 0.58 -1.6
121,994 - GFF816 0.58 -0.7
121,994 - GFF816 0.58 -2.2
121,994 - GFF816 0.58 -2.2
121,999 + GFF816 0.59 -2.5
122,000 - GFF816 0.59 -2.8
122,375 - +1.1
123,366 + -0.9
123,366 + +0.2
123,366 + +0.4
123,367 - -1.0
123,367 - +0.8
123,367 - +0.1
123,367 - -2.5
123,367 - -0.1
123,367 - -1.0
123,367 - +0.2
123,378 + +1.1
123,378 + -1.6
123,378 + +1.4
123,378 + -1.7
123,378 + -1.0
123,378 + -0.7
123,378 + -1.2
123,378 + -0.2
123,379 - -2.7
123,379 - -1.6
123,379 - +1.2
123,379 - -2.4
123,379 - -0.5
123,379 - -0.7
123,379 - -0.7
123,379 - -1.3
123,379 - +0.2
123,379 - -2.0
123,379 - -0.7
123,379 - +0.4
123,379 - -1.5
123,379 - -0.9

Or see this region's nucleotide sequence