Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF810 and GFF811 are separated by 28 nucleotides GFF811 and GFF812 are separated by 27 nucleotides GFF812 and GFF813 are separated by 438 nucleotides
GFF810 - Glutathione S-transferase (EC 2.5.1.18), at 115,739 to 116,374
GFF810
GFF811 - Glutathione S-transferase (EC 2.5.1.18), at 116,403 to 117,281
GFF811
GFF812 - Putative reductase, at 117,309 to 117,899
GFF812
GFF813 - Transcriptional regulator PA0877, LysR family, at 118,338 to 119,282
GFF813
Position (kb) 117
118 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 116.361 kb on + strand at 116.361 kb on + strand at 116.361 kb on + strand at 116.361 kb on + strand at 116.362 kb on - strand at 116.362 kb on - strand at 116.421 kb on + strand at 116.421 kb on + strand at 116.421 kb on + strand at 116.422 kb on - strand at 116.422 kb on - strand at 116.423 kb on + strand at 116.423 kb on + strand at 116.423 kb on + strand at 116.423 kb on + strand at 116.423 kb on + strand at 116.423 kb on + strand at 116.424 kb on - strand at 116.424 kb on - strand at 116.424 kb on - strand at 116.424 kb on - strand at 116.424 kb on - strand at 116.547 kb on + strand, within GFF811 at 116.547 kb on + strand, within GFF811 at 116.547 kb on + strand, within GFF811 at 116.548 kb on - strand, within GFF811 at 116.548 kb on - strand, within GFF811 at 116.548 kb on - strand, within GFF811 at 116.628 kb on + strand, within GFF811 at 116.628 kb on + strand, within GFF811 at 116.629 kb on - strand, within GFF811 at 116.629 kb on - strand, within GFF811 at 116.629 kb on - strand, within GFF811 at 116.629 kb on - strand, within GFF811 at 116.648 kb on + strand, within GFF811 at 116.648 kb on + strand, within GFF811 at 116.775 kb on + strand, within GFF811 at 116.775 kb on + strand, within GFF811 at 116.775 kb on + strand, within GFF811 at 116.775 kb on + strand, within GFF811 at 116.775 kb on + strand, within GFF811 at 116.775 kb on + strand, within GFF811 at 116.776 kb on - strand, within GFF811 at 116.776 kb on - strand, within GFF811 at 116.776 kb on - strand, within GFF811 at 116.776 kb on - strand, within GFF811 at 116.875 kb on - strand, within GFF811 at 116.875 kb on - strand, within GFF811 at 116.875 kb on - strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.901 kb on + strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.902 kb on - strand, within GFF811 at 116.907 kb on + strand, within GFF811 at 116.907 kb on + strand, within GFF811 at 116.907 kb on + strand, within GFF811 at 116.907 kb on + strand, within GFF811 at 116.907 kb on + strand, within GFF811 at 116.907 kb on + strand, within GFF811 at 116.907 kb on + strand, within GFF811 at 116.907 kb on + strand, within GFF811 at 116.908 kb on - strand, within GFF811 at 116.908 kb on - strand, within GFF811 at 116.908 kb on - strand, within GFF811 at 116.908 kb on - strand, within GFF811 at 116.908 kb on - strand, within GFF811 at 116.908 kb on - strand, within GFF811 at 116.908 kb on - strand, within GFF811 at 116.908 kb on - strand, within GFF811 at 116.928 kb on + strand, within GFF811 at 116.929 kb on - strand, within GFF811 at 116.929 kb on - strand, within GFF811 at 116.929 kb on - strand, within GFF811 at 117.003 kb on + strand, within GFF811 at 117.004 kb on - strand, within GFF811 at 117.004 kb on - strand, within GFF811 at 117.004 kb on - strand, within GFF811 at 117.021 kb on + strand, within GFF811 at 117.021 kb on + strand, within GFF811 at 117.021 kb on + strand, within GFF811 at 117.021 kb on + strand, within GFF811 at 117.022 kb on - strand, within GFF811 at 117.022 kb on - strand, within GFF811 at 117.022 kb on - strand, within GFF811 at 117.022 kb on - strand, within GFF811 at 117.022 kb on - strand, within GFF811 at 117.054 kb on + strand, within GFF811 at 117.054 kb on + strand, within GFF811 at 117.081 kb on + strand, within GFF811 at 117.082 kb on - strand, within GFF811 at 117.082 kb on - strand, within GFF811 at 117.082 kb on - strand, within GFF811 at 117.082 kb on - strand, within GFF811 at 117.082 kb on - strand, within GFF811 at 117.082 kb on - strand, within GFF811 at 117.114 kb on + strand, within GFF811 at 117.114 kb on + strand, within GFF811 at 117.115 kb on - strand, within GFF811 at 117.115 kb on - strand, within GFF811 at 117.333 kb on + strand at 117.333 kb on + strand at 117.333 kb on + strand at 117.333 kb on + strand at 117.334 kb on - strand at 117.334 kb on - strand at 117.334 kb on - strand at 117.334 kb on - strand at 117.334 kb on - strand at 117.334 kb on - strand at 117.334 kb on - strand at 117.334 kb on - strand at 117.342 kb on + strand at 117.342 kb on + strand at 117.342 kb on + strand at 117.343 kb on - strand at 117.343 kb on - strand at 117.378 kb on + strand, within GFF812 at 117.378 kb on + strand, within GFF812 at 117.378 kb on + strand, within GFF812 at 117.378 kb on + strand, within GFF812 at 117.378 kb on + strand, within GFF812 at 117.378 kb on + strand, within GFF812 at 117.378 kb on + strand, within GFF812 at 117.378 kb on + strand, within GFF812 at 117.379 kb on - strand, within GFF812 at 117.379 kb on - strand, within GFF812 at 117.379 kb on - strand, within GFF812 at 117.379 kb on - strand, within GFF812 at 117.379 kb on - strand, within GFF812 at 117.379 kb on - strand, within GFF812 at 117.379 kb on - strand, within GFF812 at 117.379 kb on - strand, within GFF812 at 117.465 kb on + strand, within GFF812 at 117.465 kb on + strand, within GFF812 at 117.465 kb on + strand, within GFF812 at 117.465 kb on + strand, within GFF812 at 117.465 kb on + strand, within GFF812 at 117.465 kb on + strand, within GFF812 at 117.465 kb on + strand, within GFF812 at 117.465 kb on + strand, within GFF812 at 117.465 kb on + strand, within GFF812 at 117.465 kb on + strand, within GFF812 at 117.465 kb on + strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.466 kb on - strand, within GFF812 at 117.474 kb on + strand, within GFF812 at 117.474 kb on + strand, within GFF812 at 117.474 kb on + strand, within GFF812 at 117.561 kb on + strand, within GFF812 at 117.561 kb on + strand, within GFF812 at 117.562 kb on - strand, within GFF812 at 117.562 kb on - strand, within GFF812 at 117.562 kb on - strand, within GFF812 at 117.562 kb on - strand, within GFF812 at 117.648 kb on + strand, within GFF812 at 117.648 kb on + strand, within GFF812 at 117.648 kb on + strand, within GFF812 at 117.648 kb on + strand, within GFF812 at 117.649 kb on - strand, within GFF812 at 117.649 kb on - strand, within GFF812 at 117.649 kb on - strand, within GFF812 at 117.649 kb on - strand, within GFF812 at 117.894 kb on + strand at 117.894 kb on + strand at 117.983 kb on - strand at 117.995 kb on + strand at 117.995 kb on + strand at 118.157 kb on + strand at 118.158 kb on - strand at 118.158 kb on - strand at 118.194 kb on - strand at 118.242 kb on + strand at 118.242 kb on + strand at 118.242 kb on + strand at 118.243 kb on - strand at 118.243 kb on - strand at 118.243 kb on - strand at 118.243 kb on - strand at 118.246 kb on + strand at 118.246 kb on + strand at 118.246 kb on + strand at 118.247 kb on - strand at 118.248 kb on + strand at 118.294 kb on - strand at 118.352 kb on + strand at 118.352 kb on + strand at 118.353 kb on - strand at 118.353 kb on - strand at 118.353 kb on - strand at 118.353 kb on - strand at 118.399 kb on + strand at 118.400 kb on - strand at 118.400 kb on - strand at 118.400 kb on - strand at 118.435 kb on + strand, within GFF813 at 118.435 kb on + strand, within GFF813 at 118.435 kb on + strand, within GFF813 at 118.435 kb on + strand, within GFF813 at 118.435 kb on + strand, within GFF813 at 118.435 kb on + strand, within GFF813 at 118.435 kb on + strand, within GFF813 at 118.436 kb on - strand, within GFF813 at 118.436 kb on - strand, within GFF813 at 118.436 kb on - strand, within GFF813 at 118.436 kb on - strand, within GFF813 at 118.436 kb on - strand, within GFF813 at 118.436 kb on - strand, within GFF813 at 118.471 kb on + strand, within GFF813 at 118.471 kb on + strand, within GFF813 at 118.471 kb on + strand, within GFF813 at 118.471 kb on + strand, within GFF813 at 118.472 kb on - strand, within GFF813 at 118.472 kb on - strand, within GFF813 at 118.472 kb on - strand, within GFF813 at 118.472 kb on - strand, within GFF813 at 118.869 kb on + strand, within GFF813 at 118.870 kb on - strand, within GFF813
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 116,361 + -0.7 116,361 + -0.4 116,361 + -0.3 116,361 + +0.2 116,362 - -0.5 116,362 - -1.2 116,421 + -0.2 116,421 + +1.5 116,421 + -0.7 116,422 - -1.2 116,422 - -0.2 116,423 + +0.0 116,423 + -1.0 116,423 + -1.5 116,423 + -2.9 116,423 + -2.0 116,423 + +0.3 116,424 - +0.6 116,424 - -0.5 116,424 - -0.6 116,424 - +0.3 116,424 - -1.0 116,547 + GFF811 0.16 +0.3 116,547 + GFF811 0.16 -0.3 116,547 + GFF811 0.16 -2.5 116,548 - GFF811 0.16 +0.8 116,548 - GFF811 0.16 -0.6 116,548 - GFF811 0.16 -0.2 116,628 + GFF811 0.26 -0.8 116,628 + GFF811 0.26 -1.6 116,629 - GFF811 0.26 -0.5 116,629 - GFF811 0.26 +0.5 116,629 - GFF811 0.26 -1.9 116,629 - GFF811 0.26 -0.7 116,648 + GFF811 0.28 +0.0 116,648 + GFF811 0.28 +0.3 116,775 + GFF811 0.42 -2.0 116,775 + GFF811 0.42 -0.3 116,775 + GFF811 0.42 -3.3 116,775 + GFF811 0.42 -0.2 116,775 + GFF811 0.42 -2.4 116,775 + GFF811 0.42 -1.6 116,776 - GFF811 0.42 -0.1 116,776 - GFF811 0.42 +1.0 116,776 - GFF811 0.42 -1.9 116,776 - GFF811 0.42 -1.7 116,875 - GFF811 0.54 +0.1 116,875 - GFF811 0.54 +0.3 116,875 - GFF811 0.54 -0.0 116,901 + GFF811 0.57 -1.9 116,901 + GFF811 0.57 -1.2 116,901 + GFF811 0.57 -1.0 116,901 + GFF811 0.57 -0.3 116,901 + GFF811 0.57 -1.1 116,901 + GFF811 0.57 +1.0 116,901 + GFF811 0.57 +0.5 116,901 + GFF811 0.57 +1.4 116,901 + GFF811 0.57 -1.5 116,901 + GFF811 0.57 +1.9 116,901 + GFF811 0.57 -0.1 116,901 + GFF811 0.57 -0.5 116,901 + GFF811 0.57 +0.8 116,901 + GFF811 0.57 +0.8 116,901 + GFF811 0.57 -1.2 116,902 - GFF811 0.57 -1.1 116,902 - GFF811 0.57 -2.0 116,902 - GFF811 0.57 -0.2 116,902 - GFF811 0.57 +1.7 116,902 - GFF811 0.57 +1.3 116,902 - GFF811 0.57 +3.2 116,902 - GFF811 0.57 -0.3 116,902 - GFF811 0.57 -0.2 116,902 - GFF811 0.57 +1.8 116,902 - GFF811 0.57 +0.8 116,902 - GFF811 0.57 +0.8 116,902 - GFF811 0.57 -2.8 116,902 - GFF811 0.57 -0.9 116,902 - GFF811 0.57 -1.0 116,902 - GFF811 0.57 -1.3 116,902 - GFF811 0.57 +0.4 116,907 + GFF811 0.57 +0.6 116,907 + GFF811 0.57 +0.5 116,907 + GFF811 0.57 -1.3 116,907 + GFF811 0.57 +0.2 116,907 + GFF811 0.57 -1.7 116,907 + GFF811 0.57 -2.3 116,907 + GFF811 0.57 +0.4 116,907 + GFF811 0.57 -1.1 116,908 - GFF811 0.57 -1.6 116,908 - GFF811 0.57 -2.6 116,908 - GFF811 0.57 -0.3 116,908 - GFF811 0.57 +1.1 116,908 - GFF811 0.57 +0.7 116,908 - GFF811 0.57 -0.6 116,908 - GFF811 0.57 +0.0 116,908 - GFF811 0.57 -1.5 116,928 + GFF811 0.60 -0.2 116,929 - GFF811 0.60 +1.0 116,929 - GFF811 0.60 -2.5 116,929 - GFF811 0.60 +1.2 117,003 + GFF811 0.68 +0.5 117,004 - GFF811 0.68 -0.9 117,004 - GFF811 0.68 +1.8 117,004 - GFF811 0.68 -1.7 117,021 + GFF811 0.70 -1.3 117,021 + GFF811 0.70 -0.7 117,021 + GFF811 0.70 -1.8 117,021 + GFF811 0.70 -0.1 117,022 - GFF811 0.70 -1.0 117,022 - GFF811 0.70 -1.9 117,022 - GFF811 0.70 -2.0 117,022 - GFF811 0.70 -1.2 117,022 - GFF811 0.70 +0.0 117,054 + GFF811 0.74 -0.7 117,054 + GFF811 0.74 -0.8 117,081 + GFF811 0.77 -1.2 117,082 - GFF811 0.77 -1.0 117,082 - GFF811 0.77 +0.8 117,082 - GFF811 0.77 +0.4 117,082 - GFF811 0.77 -0.8 117,082 - GFF811 0.77 +1.4 117,082 - GFF811 0.77 +0.6 117,114 + GFF811 0.81 -2.6 117,114 + GFF811 0.81 +0.8 117,115 - GFF811 0.81 +0.8 117,115 - GFF811 0.81 -2.0 117,333 + -0.2 117,333 + +1.6 117,333 + -1.2 117,333 + -0.5 117,334 - +2.5 117,334 - -2.0 117,334 - -0.5 117,334 - -3.3 117,334 - +0.7 117,334 - -0.4 117,334 - -2.0 117,334 - -3.1 117,342 + -0.4 117,342 + -1.8 117,342 + -0.6 117,343 - -1.0 117,343 - +1.8 117,378 + GFF812 0.12 +1.7 117,378 + GFF812 0.12 +0.7 117,378 + GFF812 0.12 -2.1 117,378 + GFF812 0.12 -2.0 117,378 + GFF812 0.12 -1.3 117,378 + GFF812 0.12 +1.7 117,378 + GFF812 0.12 +1.1 117,378 + GFF812 0.12 -0.2 117,379 - GFF812 0.12 -0.9 117,379 - GFF812 0.12 -1.7 117,379 - GFF812 0.12 +0.3 117,379 - GFF812 0.12 -0.5 117,379 - GFF812 0.12 -1.6 117,379 - GFF812 0.12 +0.4 117,379 - GFF812 0.12 -1.0 117,379 - GFF812 0.12 +0.4 117,465 + GFF812 0.26 -1.0 117,465 + GFF812 0.26 -0.5 117,465 + GFF812 0.26 +3.4 117,465 + GFF812 0.26 +0.0 117,465 + GFF812 0.26 -1.4 117,465 + GFF812 0.26 +0.0 117,465 + GFF812 0.26 -2.4 117,465 + GFF812 0.26 -0.0 117,465 + GFF812 0.26 -0.2 117,465 + GFF812 0.26 +1.3 117,465 + GFF812 0.26 -2.0 117,466 - GFF812 0.27 -1.3 117,466 - GFF812 0.27 +1.1 117,466 - GFF812 0.27 -0.6 117,466 - GFF812 0.27 +1.2 117,466 - GFF812 0.27 +0.5 117,466 - GFF812 0.27 +0.3 117,466 - GFF812 0.27 -1.7 117,466 - GFF812 0.27 +0.1 117,466 - GFF812 0.27 +0.5 117,466 - GFF812 0.27 +1.8 117,466 - GFF812 0.27 +0.2 117,466 - GFF812 0.27 +0.0 117,466 - GFF812 0.27 -1.2 117,466 - GFF812 0.27 -0.2 117,466 - GFF812 0.27 +2.3 117,466 - GFF812 0.27 -0.9 117,466 - GFF812 0.27 -0.6 117,474 + GFF812 0.28 -0.5 117,474 + GFF812 0.28 +1.4 117,474 + GFF812 0.28 -0.6 117,561 + GFF812 0.43 -1.0 117,561 + GFF812 0.43 +1.3 117,562 - GFF812 0.43 -2.4 117,562 - GFF812 0.43 -2.0 117,562 - GFF812 0.43 -1.2 117,562 - GFF812 0.43 -1.5 117,648 + GFF812 0.57 -1.0 117,648 + GFF812 0.57 +2.0 117,648 + GFF812 0.57 -2.3 117,648 + GFF812 0.57 -2.4 117,649 - GFF812 0.58 +1.6 117,649 - GFF812 0.58 -1.3 117,649 - GFF812 0.58 -0.0 117,649 - GFF812 0.58 -0.2 117,894 + +0.0 117,894 + -2.5 117,983 - -0.2 117,995 + -0.5 117,995 + +0.5 118,157 + -0.5 118,158 - +0.0 118,158 - +0.5 118,194 - +1.1 118,242 + -2.5 118,242 + -0.4 118,242 + +0.8 118,243 - -1.4 118,243 - -2.6 118,243 - -1.9 118,243 - +0.1 118,246 + -1.4 118,246 + -3.4 118,246 + +0.5 118,247 - -0.0 118,248 + -2.2 118,294 - +0.3 118,352 + +1.4 118,352 + +1.8 118,353 - -0.6 118,353 - +1.8 118,353 - -0.4 118,353 - -0.2 118,399 + +0.3 118,400 - -1.6 118,400 - -0.5 118,400 - -1.6 118,435 + GFF813 0.10 +1.3 118,435 + GFF813 0.10 -0.7 118,435 + GFF813 0.10 -0.3 118,435 + GFF813 0.10 +0.9 118,435 + GFF813 0.10 +0.8 118,435 + GFF813 0.10 -2.7 118,435 + GFF813 0.10 -0.5 118,436 - GFF813 0.10 +2.0 118,436 - GFF813 0.10 +0.2 118,436 - GFF813 0.10 -2.0 118,436 - GFF813 0.10 -0.2 118,436 - GFF813 0.10 +0.0 118,436 - GFF813 0.10 -1.1 118,471 + GFF813 0.14 +0.8 118,471 + GFF813 0.14 -0.2 118,471 + GFF813 0.14 +1.7 118,471 + GFF813 0.14 +0.4 118,472 - GFF813 0.14 -1.1 118,472 - GFF813 0.14 -1.7 118,472 - GFF813 0.14 -0.1 118,472 - GFF813 0.14 -0.5 118,869 + GFF813 0.56 +0.6 118,870 - GFF813 0.56 +1.6
Or see this region's nucleotide sequence