Strain Fitness in Variovorax sp. SCN45 around GFF792

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
83,503	+		GFF790	0.38	-2.3
83,503	+		GFF790	0.38	-0.5
83,503	+		GFF790	0.38	-0.7
83,504	-		GFF790	0.38	-2.4
83,504	-		GFF790	0.38	-1.5
83,632	+		GFF790	0.57	-2.9
83,633	-		GFF790	0.57	-1.2
83,633	-		GFF790	0.57	-1.9
83,726	+		GFF790	0.71	-1.5
83,726	+		GFF790	0.71	+0.1
83,727	-		GFF790	0.71	-0.7
83,727	-		GFF790	0.71	-1.0
83,727	-		GFF790	0.71	-0.4
83,978	+				-1.3
83,979	-				+0.7
84,107	+		GFF791	0.33	-1.7
84,107	+		GFF791	0.33	+0.3
84,107	+		GFF791	0.33	-2.0
84,107	+		GFF791	0.33	-1.7
84,107	+		GFF791	0.33	-0.4
84,108	-		GFF791	0.33	-0.7
84,108	-		GFF791	0.33	+0.6
84,108	-		GFF791	0.33	+1.4
84,137	+		GFF791	0.39	+2.8
84,137	+		GFF791	0.39	-1.2
84,138	-		GFF791	0.39	-2.6
84,465	-				-1.7
84,496	+				-1.0
84,496	+				-1.0
84,496	+				+1.7
84,496	+				-1.9
84,497	-				-1.9
84,497	-				-0.1
84,497	-				-1.0
84,497	-				+0.6
84,497	-				-0.2
84,497	-				-2.0
84,502	+				+1.3
84,502	+				-0.1
84,502	+				-2.8
84,502	+				-1.3
84,503	-				-0.6
84,503	-				-1.0
84,503	-				-0.5
84,503	-				-0.2
84,846	-		GFF792	0.35	-1.4
84,846	-		GFF792	0.35	+0.3
85,039	+		GFF792	0.54	+0.1
85,040	-		GFF792	0.54	-2.0
85,040	-		GFF792	0.54	-1.3
85,040	-		GFF792	0.54	-0.3
85,040	-		GFF792	0.54	-0.7
85,220	+		GFF792	0.72	-1.0
85,220	+		GFF792	0.72	-1.6
85,221	-		GFF792	0.72	-1.2
85,221	-		GFF792	0.72	+0.5
85,221	-		GFF792	0.72	-0.5
85,454	+				+1.0
85,454	+				+0.2
85,454	+				-0.2
85,454	+				-0.7
85,454	+				-0.7
85,455	-				+0.3
85,455	-				+1.7
85,455	-				-1.6
85,498	+				+1.8
85,498	+				+0.5
85,498	+				+0.3
85,498	+				-1.5
85,499	-				-0.6
85,499	-				-0.8
85,499	-				-0.1
85,499	-				-1.3
85,499	-				-0.8
85,499	-				-1.2
85,499	-				-0.3
85,630	+				-0.7
85,631	-				+1.3
86,447	+				+0.3
86,447	+				-2.8
86,447	+				-3.6
86,448	-				-1.8