Strain Fitness in Variovorax sp. SCN45 around GFF7317

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
8,726	-		GFF7315	0.11	+1.0
8,735	+		GFF7315	0.13	-0.2
8,735	+		GFF7315	0.13	+0.5
8,736	-		GFF7315	0.13	-0.5
8,856	-		GFF7315	0.30	+2.1
8,857	+		GFF7315	0.30	-4.1
8,857	+		GFF7315	0.30	-2.2
8,858	-		GFF7315	0.30	-1.7
8,858	-		GFF7315	0.30	-0.4
8,858	-		GFF7315	0.30	-1.1
8,928	+		GFF7315	0.40	-0.6
8,928	+		GFF7315	0.40	-1.5
8,929	-		GFF7315	0.40	+0.5
8,929	-		GFF7315	0.40	+0.4
8,929	-		GFF7315	0.40	-0.2
9,005	+		GFF7315	0.51	-2.2
9,006	-		GFF7315	0.51	-1.4
9,135	+		GFF7315	0.69	-0.2
9,135	+		GFF7315	0.69	-1.8
9,136	-		GFF7315	0.69	-1.4
9,136	-		GFF7315	0.69	-1.6
9,335	+				-0.5
9,335	+				-1.4
9,335	+				-1.9
9,335	+				-2.3
9,335	+				-0.5
9,335	+				+1.9
9,335	+				+0.8
9,335	+				-1.8
9,335	+				-2.1
9,335	+				+1.4
9,336	-				+1.2
9,336	-				-0.9
9,336	-				-0.2
9,485	+		GFF7316	0.49	-1.2
9,485	+		GFF7316	0.49	-2.3
9,485	+		GFF7316	0.49	-1.4
9,485	+		GFF7316	0.49	+0.0
9,485	+		GFF7316	0.49	-0.7
9,485	+		GFF7316	0.49	-0.8
9,485	+		GFF7316	0.49	+0.2
9,485	+		GFF7316	0.49	-0.8
9,485	+		GFF7316	0.49	-1.5
9,485	+		GFF7316	0.49	+1.1
9,485	+		GFF7316	0.49	+0.6
9,485	+		GFF7316	0.49	-0.9
9,485	+		GFF7316	0.49	+0.7
9,485	+		GFF7316	0.49	-0.4
9,485	+		GFF7316	0.49	+0.3
9,485	+		GFF7316	0.49	-0.7
9,485	+		GFF7316	0.49	-1.7
9,486	-		GFF7316	0.49	+1.0
9,486	-		GFF7316	0.49	-0.5
9,486	-		GFF7316	0.49	+1.5
9,486	-		GFF7316	0.49	-0.2
9,486	-		GFF7316	0.49	+1.3
9,486	-		GFF7316	0.49	-0.9
9,486	-		GFF7316	0.49	-2.7
9,633	+				-0.4
9,633	+				-0.3
9,633	+				-0.7
9,633	+				+0.6
9,633	+				+1.8
9,633	+				-0.1
9,633	+				-1.2
9,633	+				-0.2
9,634	-				-0.8
9,634	-				-3.3
9,634	-				-1.2
9,634	-				-1.7
9,715	+				+2.1
9,715	+				-2.0
9,716	-				+0.5
9,716	-				-1.4
9,716	-				+1.1
9,716	-				+0.3
9,716	-				-1.9
9,733	+				+1.5
9,733	+				-1.1
9,733	+				-1.6
9,733	+				-0.8
9,733	+				-1.9
9,733	+				-1.3
9,733	+				+1.7
9,733	+				+1.8
9,733	+				-0.7
9,733	+				-1.3
9,733	+				-0.5
9,734	-				-0.1
9,734	-				-0.1
9,734	-				-1.6
9,734	-				-0.8
9,734	-				+0.7
9,734	-				-1.2
9,734	-				+2.5
9,734	-				-2.2
9,734	-				-1.1
9,734	-				-0.9
9,734	-				-0.4
9,734	-				-0.5
9,734	-				-0.8
9,734	-				-0.4
9,751	+				+0.3
9,751	+				+3.1
9,751	+				-0.4
9,751	+				-3.4
9,751	+				+1.0
9,751	+				-2.5
9,751	+				+1.3
9,751	+				-0.4
9,751	+				-0.1
9,751	+				-0.2
9,751	+				-3.8
9,751	+				+2.1
9,751	+				-1.5
9,751	+				-0.0
9,751	+				+0.3
9,751	+				-0.6
9,751	+				-1.1
9,751	+				+0.3
9,751	+				-0.4
9,751	+				+0.6
9,751	+				+0.9
9,751	+				-1.2
9,751	+				-1.9
9,751	+				-1.2
9,751	+				+0.0
9,751	+				+0.5
9,751	+				+0.3
9,751	+				+0.0
9,751	+				-1.4
9,752	-				+0.0
9,752	-				+0.5
9,752	-				-0.8
9,752	-				-1.0
9,752	-				+0.1
9,752	-				+0.3
9,752	-				-3.0
9,752	-				+0.3
9,752	-				-2.1
9,752	-				-1.1
9,752	-				-1.7
9,752	-				-1.0
9,752	-				-1.1
9,752	-				+1.0
9,752	-				-0.9
9,752	-				+0.2
9,752	-				-0.2
9,752	-				-0.0
9,752	-				+0.2
9,752	-				-1.6
9,752	-				+0.1
9,752	-				-0.3
9,752	-				-0.3
9,752	-				-1.6
9,752	-				-0.2
10,035	+		GFF7317	0.12	+1.4
10,126	+		GFF7317	0.15	-0.3
10,126	+		GFF7317	0.15	-2.9
10,126	+		GFF7317	0.15	+0.4
10,126	+		GFF7317	0.15	+0.1
10,126	+		GFF7317	0.15	-0.2
10,126	+		GFF7317	0.15	-0.2
10,126	+		GFF7317	0.15	-2.0
10,126	+		GFF7317	0.15	+1.6
10,126	+		GFF7317	0.15	-2.8
10,126	+		GFF7317	0.15	+1.2
10,126	+		GFF7317	0.15	+0.2
10,126	+		GFF7317	0.15	-1.4
10,126	+		GFF7317	0.15	-1.6
10,126	+		GFF7317	0.15	-2.8
10,127	-		GFF7317	0.15	-2.7
10,127	-		GFF7317	0.15	+2.1
10,127	-		GFF7317	0.15	+0.9
10,127	-		GFF7317	0.15	+0.6
10,127	-		GFF7317	0.15	-1.1
10,127	-		GFF7317	0.15	-2.2
10,135	+		GFF7317	0.16	-1.6
10,135	+		GFF7317	0.16	-2.9
10,135	+		GFF7317	0.16	+0.2
10,135	+		GFF7317	0.16	-1.2
10,135	+		GFF7317	0.16	-3.4
10,136	-		GFF7317	0.16	-1.0
10,136	-		GFF7317	0.16	+0.1
10,136	-		GFF7317	0.16	+2.3
10,156	+		GFF7317	0.16	-1.6
10,156	+		GFF7317	0.16	+1.4
10,156	+		GFF7317	0.16	-1.2
10,156	+		GFF7317	0.16	-1.0
10,156	+		GFF7317	0.16	-1.1
10,156	+		GFF7317	0.16	+0.5
10,156	+		GFF7317	0.16	-2.2
10,156	+		GFF7317	0.16	-1.7
10,156	+		GFF7317	0.16	+0.6
10,156	+		GFF7317	0.16	-1.1
10,156	+		GFF7317	0.16	-1.2
10,156	+		GFF7317	0.16	-0.5
10,156	+		GFF7317	0.16	-2.2
10,156	+		GFF7317	0.16	+0.8
10,156	+		GFF7317	0.16	-0.5
10,156	+		GFF7317	0.16	-1.9
10,156	+		GFF7317	0.16	-1.8
10,156	+		GFF7317	0.16	-1.7
10,156	+		GFF7317	0.16	+0.2
10,156	+		GFF7317	0.16	+0.8
10,156	+		GFF7317	0.16	-0.6
10,156	+		GFF7317	0.16	-0.8
10,156	+		GFF7317	0.16	+0.7
10,156	+		GFF7317	0.16	+0.3
10,157	-		GFF7317	0.16	-1.0
10,157	-		GFF7317	0.16	-0.8
10,157	-		GFF7317	0.16	+0.1
10,157	-		GFF7317	0.16	+3.1
10,157	-		GFF7317	0.16	+0.2
10,157	-		GFF7317	0.16	-0.8
10,157	-		GFF7317	0.16	+0.4
10,157	-		GFF7317	0.16	+0.5
10,157	-		GFF7317	0.16	-0.6
10,157	-		GFF7317	0.16	+0.0
10,157	-		GFF7317	0.16	+0.4
10,157	-		GFF7317	0.16	-0.2
10,157	-		GFF7317	0.16	-1.2
10,157	-		GFF7317	0.16	-0.5
10,157	-		GFF7317	0.16	-0.0
10,157	-		GFF7317	0.16	+0.6
10,157	-		GFF7317	0.16	-0.2
10,157	-		GFF7317	0.16	-1.2
10,157	-		GFF7317	0.16	-2.0
10,157	-		GFF7317	0.16	+0.8
10,157	-		GFF7317	0.16	-0.6
10,234	+		GFF7317	0.19	-3.1
10,234	+		GFF7317	0.19	+0.3
10,234	+		GFF7317	0.19	+0.5
10,234	+		GFF7317	0.19	-1.3
10,234	+		GFF7317	0.19	-0.2
10,234	+		GFF7317	0.19	-0.1
10,234	+		GFF7317	0.19	+2.4
10,234	+		GFF7317	0.19	-0.5
10,234	+		GFF7317	0.19	+0.8
10,235	-		GFF7317	0.19	+0.5
10,235	-		GFF7317	0.19	+1.3
10,235	-		GFF7317	0.19	-0.0
10,235	-		GFF7317	0.19	+1.0
10,235	-		GFF7317	0.19	-0.2
10,235	-		GFF7317	0.19	+2.3
10,235	-		GFF7317	0.19	-1.5
10,235	-		GFF7317	0.19	-1.1
10,235	-		GFF7317	0.19	+0.1
10,235	-		GFF7317	0.19	-0.4
10,235	-		GFF7317	0.19	+0.1
10,510	+		GFF7317	0.28	-0.3
10,510	+		GFF7317	0.28	+1.9
10,510	+		GFF7317	0.28	+1.1
10,510	+		GFF7317	0.28	-2.1
10,510	+		GFF7317	0.28	-0.9
10,510	+		GFF7317	0.28	-1.4
10,510	+		GFF7317	0.28	-1.0
10,510	+		GFF7317	0.28	-0.6
10,510	+		GFF7317	0.28	+0.9
10,510	+		GFF7317	0.28	+0.9
10,511	-		GFF7317	0.28	-1.8
10,511	-		GFF7317	0.28	-0.8
10,511	-		GFF7317	0.28	+2.6
10,511	-		GFF7317	0.28	+0.1
10,511	-		GFF7317	0.28	+1.9
10,511	-		GFF7317	0.28	-0.5
10,511	-		GFF7317	0.28	-0.4
10,511	-		GFF7317	0.28	+1.1
10,511	-		GFF7317	0.28	+0.3
10,511	-		GFF7317	0.28	-1.8
10,511	-		GFF7317	0.28	-2.4
10,511	-		GFF7317	0.28	-1.6
10,528	+		GFF7317	0.28	+1.8
10,528	+		GFF7317	0.28	+1.7
10,528	+		GFF7317	0.28	+0.5
10,528	+		GFF7317	0.28	+1.9
10,528	+		GFF7317	0.28	-1.7
10,529	-		GFF7317	0.28	-2.3
10,529	-		GFF7317	0.28	+1.2
10,529	-		GFF7317	0.28	-3.2
10,529	-		GFF7317	0.28	-0.8
10,529	-		GFF7317	0.28	-0.0
10,529	-		GFF7317	0.28	-0.2
10,529	-		GFF7317	0.28	+0.1
10,555	+		GFF7317	0.29	-1.5
10,555	+		GFF7317	0.29	-3.2
10,555	+		GFF7317	0.29	-0.5
10,556	-		GFF7317	0.29	+0.4
10,556	-		GFF7317	0.29	-1.8
10,556	-		GFF7317	0.29	+0.3
10,556	-		GFF7317	0.29	+0.4
10,564	+		GFF7317	0.29	-2.8
10,564	+		GFF7317	0.29	+1.3
10,564	+		GFF7317	0.29	-2.0
10,564	+		GFF7317	0.29	-0.1
10,564	+		GFF7317	0.29	-0.2
10,565	-		GFF7317	0.29	-1.0
10,565	-		GFF7317	0.29	-0.7
10,565	-		GFF7317	0.29	-0.3
10,759	+		GFF7317	0.35	-0.7
10,759	+		GFF7317	0.35	-1.3
10,759	+		GFF7317	0.35	-0.5
10,760	-		GFF7317	0.35	+0.2
10,760	-		GFF7317	0.35	+0.1
10,760	-		GFF7317	0.35	-2.1
10,760	-		GFF7317	0.35	-0.5
10,760	-		GFF7317	0.35	-0.5
10,819	+		GFF7317	0.37	-2.2
10,819	+		GFF7317	0.37	-2.0
10,819	+		GFF7317	0.37	-3.5
10,819	+		GFF7317	0.37	-1.4
10,819	+		GFF7317	0.37	-0.5
10,819	+		GFF7317	0.37	-0.5
10,819	+		GFF7317	0.37	-1.1
10,819	+		GFF7317	0.37	+0.5
10,820	-		GFF7317	0.37	+1.0
10,820	-		GFF7317	0.37	+0.1
10,820	-		GFF7317	0.37	-0.2
10,820	-		GFF7317	0.37	-0.6
10,820	-		GFF7317	0.37	-2.1
10,820	-		GFF7317	0.37	-0.5
10,820	-		GFF7317	0.37	+0.4
10,820	-		GFF7317	0.37	-1.0
10,820	-		GFF7317	0.37	-2.2
10,820	-		GFF7317	0.37	+2.3
10,820	-		GFF7317	0.37	+2.2
10,820	-		GFF7317	0.37	-1.6
10,820	-		GFF7317	0.37	+1.5
10,820	-		GFF7317	0.37	-1.7
10,975	+		GFF7317	0.42	-0.2
10,975	+		GFF7317	0.42	-0.0
10,975	+		GFF7317	0.42	-2.5
10,975	+		GFF7317	0.42	+1.3
10,975	+		GFF7317	0.42	+0.0
10,976	-		GFF7317	0.42	+0.6
10,976	-		GFF7317	0.42	-0.2
10,976	-		GFF7317	0.42	-1.8
11,212	+		GFF7317	0.50	-1.5
11,212	+		GFF7317	0.50	-0.5
11,212	+		GFF7317	0.50	-0.7
11,212	+		GFF7317	0.50	-1.6
11,212	+		GFF7317	0.50	-3.2
11,212	+		GFF7317	0.50	-1.9
11,212	+		GFF7317	0.50	-0.0
11,212	+		GFF7317	0.50	-1.4
11,212	+		GFF7317	0.50	-0.5
11,212	+		GFF7317	0.50	+0.2
11,212	+		GFF7317	0.50	-0.5
11,212	+		GFF7317	0.50	+1.1
11,212	+		GFF7317	0.50	+0.3
11,212	+		GFF7317	0.50	+0.2
11,212	+		GFF7317	0.50	-2.5
11,213	-		GFF7317	0.50	-1.5
11,213	-		GFF7317	0.50	+0.3
11,213	-		GFF7317	0.50	+0.1
11,213	-		GFF7317	0.50	-1.1
11,213	-		GFF7317	0.50	+0.9
11,213	-		GFF7317	0.50	-0.1
11,213	-		GFF7317	0.50	-2.3
11,213	-		GFF7317	0.50	+2.1
11,213	-		GFF7317	0.50	-0.2
11,213	-		GFF7317	0.50	-0.2
11,213	-		GFF7317	0.50	-0.9
11,213	-		GFF7317	0.50	+0.4
11,213	-		GFF7317	0.50	-1.5
11,213	-		GFF7317	0.50	-1.5
11,213	-		GFF7317	0.50	+2.1
11,213	-		GFF7317	0.50	-1.1
11,557	+		GFF7317	0.61	-0.9
11,557	+		GFF7317	0.61	-0.4
11,557	+		GFF7317	0.61	+0.5
11,557	+		GFF7317	0.61	+1.0
11,557	+		GFF7317	0.61	-1.5
11,558	-		GFF7317	0.61	-3.5
11,558	-		GFF7317	0.61	-0.7
11,558	-		GFF7317	0.61	-0.7
11,650	+		GFF7317	0.64	+1.7
11,650	+		GFF7317	0.64	-1.4
11,651	-		GFF7317	0.64	-0.9
11,651	-		GFF7317	0.64	+0.5
11,662	+		GFF7317	0.64	-0.1
12,262	+		GFF7317	0.83	-2.5
12,262	+		GFF7317	0.83	-1.2
12,262	+		GFF7317	0.83	-1.5
12,263	-		GFF7317	0.83	-0.6
12,409	+		GFF7317	0.88	-1.3
12,410	-		GFF7317	0.88	+1.1
12,676	+				-2.7
12,676	+				+1.1
12,676	+				-4.0
12,676	+				-0.8
12,676	+				-1.7
12,676	+				+1.9
12,676	+				+1.3
12,677	-				+0.1
12,677	-				-1.8
12,677	-				-2.3
12,677	-				+0.7
12,677	-				-1.7
12,709	+				+1.9
12,709	+				-0.5
12,710	-				-0.5
12,710	-				-3.4
12,710	-				+0.0
12,710	-				+1.1
12,710	-				+0.8
13,004	+		GFF7318	0.17	+2.5
13,004	+		GFF7318	0.17	-0.9
13,004	+		GFF7318	0.17	+0.1
13,074	+		GFF7318	0.23	+0.5
13,074	+		GFF7318	0.23	-2.4
13,074	+		GFF7318	0.23	-0.0
13,074	+		GFF7318	0.23	+0.3
13,074	+		GFF7318	0.23	-1.5
13,074	+		GFF7318	0.23	-0.4
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