Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7200 and GFF7201 overlap by 4 nucleotides GFF7201 and GFF7202 are separated by 17 nucleotides GFF7202 and GFF7203 are separated by 7 nucleotides
GFF7200 - Alkanesulfonates transport system permease protein, at 18,592 to 19,440
GFF7200
GFF7201 - Alkanesulfonates transport system permease protein, at 19,437 to 20,252
GFF7201
GFF7202 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 20,270 to 21,142
GFF7202
GFF7203 - Two-component transcriptional response regulator, LuxR family, at 21,150 to 22,622
GFF7203
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2 at 19.291 kb on + strand, within GFF7200 at 19.292 kb on - strand, within GFF7200 at 20.032 kb on - strand, within GFF7201 at 20.046 kb on + strand, within GFF7201 at 20.047 kb on - strand, within GFF7201 at 20.333 kb on + strand at 20.333 kb on + strand at 20.333 kb on + strand at 20.333 kb on + strand at 20.334 kb on - strand at 20.334 kb on - strand at 20.484 kb on - strand, within GFF7202 at 20.622 kb on - strand, within GFF7202 at 20.622 kb on - strand, within GFF7202 at 21.152 kb on - strand at 21.387 kb on + strand, within GFF7203 at 21.387 kb on + strand, within GFF7203 at 21.387 kb on + strand, within GFF7203 at 21.388 kb on - strand, within GFF7203 at 21.676 kb on + strand, within GFF7203 at 21.676 kb on + strand, within GFF7203 at 21.787 kb on + strand, within GFF7203 at 21.787 kb on + strand, within GFF7203 at 21.788 kb on - strand, within GFF7203 at 21.788 kb on - strand, within GFF7203 at 22.043 kb on - strand, within GFF7203 at 22.093 kb on + strand, within GFF7203
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 19,291 + GFF7200 0.82 -2.6 19,292 - GFF7200 0.82 -0.0 20,032 - GFF7201 0.73 -0.3 20,046 + GFF7201 0.75 -0.4 20,047 - GFF7201 0.75 +2.5 20,333 + -0.7 20,333 + -0.9 20,333 + -2.4 20,333 + -0.1 20,334 - -0.3 20,334 - -0.4 20,484 - GFF7202 0.25 -0.4 20,622 - GFF7202 0.40 -0.3 20,622 - GFF7202 0.40 -2.2 21,152 - -1.0 21,387 + GFF7203 0.16 +1.2 21,387 + GFF7203 0.16 +1.1 21,387 + GFF7203 0.16 -0.5 21,388 - GFF7203 0.16 +1.0 21,676 + GFF7203 0.36 -0.1 21,676 + GFF7203 0.36 -0.0 21,787 + GFF7203 0.43 +0.8 21,787 + GFF7203 0.43 +0.1 21,788 - GFF7203 0.43 +2.1 21,788 - GFF7203 0.43 -2.2 22,043 - GFF7203 0.61 -2.0 22,093 + GFF7203 0.64 -1.9
Or see this region's nucleotide sequence