Strain Fitness in Variovorax sp. SCN45 around GFF7158

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7157 and GFF7158 are separated by 80 nucleotidesGFF7158 and GFF7159 overlap by 4 nucleotidesGFF7159 and GFF7160 are separated by 47 nucleotides GFF7157 - Peptidase M20D, amidohydrolase, at 21,710 to 22,912 GFF7157 GFF7158 - Pirin, at 22,993 to 23,847 GFF7158 GFF7159 - Putative reductase, at 23,844 to 24,431 GFF7159 GFF7160 - hypothetical protein, at 24,479 to 24,859 GFF7160 Position (kb) 22 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 22.038 kb on + strand, within GFF7157at 22.038 kb on + strand, within GFF7157at 22.038 kb on + strand, within GFF7157at 22.038 kb on + strand, within GFF7157at 22.038 kb on + strand, within GFF7157at 22.038 kb on + strand, within GFF7157at 22.038 kb on + strand, within GFF7157at 22.038 kb on + strand, within GFF7157at 22.038 kb on + strand, within GFF7157at 22.038 kb on + strand, within GFF7157at 22.038 kb on + strand, within GFF7157at 22.038 kb on + strand, within GFF7157at 22.038 kb on + strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.039 kb on - strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.350 kb on + strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.351 kb on - strand, within GFF7157at 22.757 kb on + strand, within GFF7157at 22.994 kb on + strandat 22.994 kb on + strandat 22.994 kb on + strandat 22.994 kb on + strandat 22.994 kb on + strandat 22.994 kb on + strandat 22.994 kb on + strandat 22.995 kb on - strandat 22.995 kb on - strandat 22.995 kb on - strandat 22.995 kb on - strandat 23.087 kb on + strand, within GFF7158at 23.087 kb on + strand, within GFF7158at 23.087 kb on + strand, within GFF7158at 23.087 kb on + strand, within GFF7158at 23.087 kb on + strand, within GFF7158at 23.087 kb on + strand, within GFF7158at 23.087 kb on + strand, within GFF7158at 23.088 kb on - strand, within GFF7158at 23.297 kb on + strand, within GFF7158at 23.297 kb on + strand, within GFF7158at 23.298 kb on - strand, within GFF7158at 23.336 kb on + strand, within GFF7158at 23.336 kb on + strand, within GFF7158at 23.336 kb on + strand, within GFF7158at 23.336 kb on + strand, within GFF7158at 23.336 kb on + strand, within GFF7158at 23.336 kb on + strand, within GFF7158at 23.336 kb on + strand, within GFF7158at 23.336 kb on + strand, within GFF7158at 23.336 kb on + strand, within GFF7158at 23.336 kb on + strand, within GFF7158at 23.336 kb on + strand, within GFF7158at 23.336 kb on + strand, within GFF7158at 23.337 kb on - strand, within GFF7158at 23.337 kb on - strand, within GFF7158at 23.337 kb on - strand, within GFF7158at 23.337 kb on - strand, within GFF7158at 23.337 kb on - strand, within GFF7158at 23.337 kb on - strand, within GFF7158at 23.337 kb on - strand, within GFF7158at 23.337 kb on - strand, within GFF7158at 23.337 kb on - strand, within GFF7158at 23.337 kb on - strand, within GFF7158at 23.337 kb on - strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.438 kb on + strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.439 kb on - strand, within GFF7158at 23.615 kb on + strand, within GFF7158at 23.615 kb on + strand, within GFF7158at 23.615 kb on + strand, within GFF7158at 23.615 kb on + strand, within GFF7158at 23.615 kb on + strand, within GFF7158at 23.615 kb on + strand, within GFF7158at 23.615 kb on + strand, within GFF7158at 23.616 kb on - strand, within GFF7158at 23.616 kb on - strand, within GFF7158at 23.616 kb on - strand, within GFF7158at 23.616 kb on - strand, within GFF7158at 23.639 kb on + strand, within GFF7158at 23.639 kb on + strand, within GFF7158at 23.639 kb on + strand, within GFF7158at 23.639 kb on + strand, within GFF7158at 23.639 kb on + strand, within GFF7158at 23.640 kb on - strand, within GFF7158at 23.640 kb on - strand, within GFF7158at 23.640 kb on - strand, within GFF7158at 23.640 kb on - strand, within GFF7158at 23.640 kb on - strand, within GFF7158at 23.640 kb on - strand, within GFF7158at 23.807 kb on + strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.808 kb on - strandat 23.830 kb on - strandat 24.077 kb on - strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.115 kb on + strand, within GFF7159at 24.116 kb on - strand, within GFF7159at 24.116 kb on - strand, within GFF7159at 24.116 kb on - strand, within GFF7159at 24.116 kb on - strand, within GFF7159at 24.116 kb on - strand, within GFF7159at 24.116 kb on - strand, within GFF7159at 24.116 kb on - strand, within GFF7159at 24.116 kb on - strand, within GFF7159at 24.116 kb on - strand, within GFF7159at 24.116 kb on - strand, within GFF7159at 24.116 kb on - strand, within GFF7159at 24.116 kb on - strand, within GFF7159at 24.116 kb on - strand, within GFF7159at 24.163 kb on + strand, within GFF7159at 24.164 kb on - strand, within GFF7159at 24.164 kb on - strand, within GFF7159at 24.696 kb on + strand, within GFF7160at 24.696 kb on + strand, within GFF7160

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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22,038 + GFF7157 0.27 -1.2
22,038 + GFF7157 0.27 +0.2
22,038 + GFF7157 0.27 -1.1
22,038 + GFF7157 0.27 -2.0
22,038 + GFF7157 0.27 -0.5
22,038 + GFF7157 0.27 +1.3
22,038 + GFF7157 0.27 -0.2
22,038 + GFF7157 0.27 -2.9
22,038 + GFF7157 0.27 -2.5
22,038 + GFF7157 0.27 +0.4
22,038 + GFF7157 0.27 +0.3
22,038 + GFF7157 0.27 +1.8
22,038 + GFF7157 0.27 +1.8
22,039 - GFF7157 0.27 +1.1
22,039 - GFF7157 0.27 -1.2
22,039 - GFF7157 0.27 +0.7
22,039 - GFF7157 0.27 +0.2
22,039 - GFF7157 0.27 +1.5
22,039 - GFF7157 0.27 -1.1
22,039 - GFF7157 0.27 -1.5
22,039 - GFF7157 0.27 -0.7
22,039 - GFF7157 0.27 -1.2
22,039 - GFF7157 0.27 +0.8
22,039 - GFF7157 0.27 +0.9
22,039 - GFF7157 0.27 +0.5
22,039 - GFF7157 0.27 -1.7
22,039 - GFF7157 0.27 +1.4
22,039 - GFF7157 0.27 -1.1
22,039 - GFF7157 0.27 +0.4
22,039 - GFF7157 0.27 +1.2
22,039 - GFF7157 0.27 +0.2
22,039 - GFF7157 0.27 -1.5
22,350 + GFF7157 0.53 +0.6
22,350 + GFF7157 0.53 -0.6
22,350 + GFF7157 0.53 +0.8
22,350 + GFF7157 0.53 +0.4
22,350 + GFF7157 0.53 -0.6
22,350 + GFF7157 0.53 -0.8
22,350 + GFF7157 0.53 +0.5
22,350 + GFF7157 0.53 -0.2
22,350 + GFF7157 0.53 +1.2
22,350 + GFF7157 0.53 +1.4
22,350 + GFF7157 0.53 -0.6
22,350 + GFF7157 0.53 -0.0
22,350 + GFF7157 0.53 -2.7
22,350 + GFF7157 0.53 +0.0
22,350 + GFF7157 0.53 -1.3
22,350 + GFF7157 0.53 -1.0
22,350 + GFF7157 0.53 -1.5
22,350 + GFF7157 0.53 +0.7
22,351 - GFF7157 0.53 +0.6
22,351 - GFF7157 0.53 -1.1
22,351 - GFF7157 0.53 -1.5
22,351 - GFF7157 0.53 -0.5
22,351 - GFF7157 0.53 -0.5
22,351 - GFF7157 0.53 -2.9
22,351 - GFF7157 0.53 +0.7
22,351 - GFF7157 0.53 +2.7
22,351 - GFF7157 0.53 +0.5
22,351 - GFF7157 0.53 +0.1
22,351 - GFF7157 0.53 +0.2
22,351 - GFF7157 0.53 +2.4
22,351 - GFF7157 0.53 +2.2
22,351 - GFF7157 0.53 -0.1
22,351 - GFF7157 0.53 +3.2
22,351 - GFF7157 0.53 +0.9
22,351 - GFF7157 0.53 -0.5
22,351 - GFF7157 0.53 -2.6
22,351 - GFF7157 0.53 -1.3
22,757 + GFF7157 0.87 -1.9
22,994 + +0.1
22,994 + -1.8
22,994 + +0.8
22,994 + -0.1
22,994 + +0.8
22,994 + -0.8
22,994 + -2.9
22,995 - -2.4
22,995 - -0.6
22,995 - -0.6
22,995 - +0.5
23,087 + GFF7158 0.11 -3.1
23,087 + GFF7158 0.11 +1.0
23,087 + GFF7158 0.11 -2.6
23,087 + GFF7158 0.11 -0.1
23,087 + GFF7158 0.11 +0.2
23,087 + GFF7158 0.11 -1.3
23,087 + GFF7158 0.11 -2.6
23,088 - GFF7158 0.11 +0.1
23,297 + GFF7158 0.36 -2.3
23,297 + GFF7158 0.36 -2.5
23,298 - GFF7158 0.36 -1.4
23,336 + GFF7158 0.40 +1.5
23,336 + GFF7158 0.40 +0.4
23,336 + GFF7158 0.40 -2.0
23,336 + GFF7158 0.40 +0.8
23,336 + GFF7158 0.40 -0.6
23,336 + GFF7158 0.40 +0.8
23,336 + GFF7158 0.40 +0.7
23,336 + GFF7158 0.40 +0.0
23,336 + GFF7158 0.40 -1.7
23,336 + GFF7158 0.40 -1.0
23,336 + GFF7158 0.40 -1.5
23,336 + GFF7158 0.40 -1.2
23,337 - GFF7158 0.40 -0.2
23,337 - GFF7158 0.40 -1.9
23,337 - GFF7158 0.40 -1.4
23,337 - GFF7158 0.40 +0.5
23,337 - GFF7158 0.40 +1.4
23,337 - GFF7158 0.40 -1.6
23,337 - GFF7158 0.40 +0.4
23,337 - GFF7158 0.40 +2.6
23,337 - GFF7158 0.40 -2.4
23,337 - GFF7158 0.40 +0.8
23,337 - GFF7158 0.40 -1.6
23,438 + GFF7158 0.52 -0.8
23,438 + GFF7158 0.52 -0.7
23,438 + GFF7158 0.52 +1.1
23,438 + GFF7158 0.52 +1.4
23,438 + GFF7158 0.52 -0.6
23,438 + GFF7158 0.52 +0.4
23,438 + GFF7158 0.52 +0.4
23,438 + GFF7158 0.52 +1.6
23,438 + GFF7158 0.52 -1.0
23,438 + GFF7158 0.52 -0.0
23,438 + GFF7158 0.52 -0.6
23,438 + GFF7158 0.52 +1.4
23,438 + GFF7158 0.52 -1.8
23,438 + GFF7158 0.52 +0.8
23,438 + GFF7158 0.52 -1.3
23,438 + GFF7158 0.52 +0.5
23,439 - GFF7158 0.52 -0.6
23,439 - GFF7158 0.52 -1.1
23,439 - GFF7158 0.52 -1.5
23,439 - GFF7158 0.52 -0.9
23,439 - GFF7158 0.52 -0.5
23,439 - GFF7158 0.52 +0.8
23,439 - GFF7158 0.52 -0.3
23,439 - GFF7158 0.52 -0.1
23,439 - GFF7158 0.52 -1.4
23,439 - GFF7158 0.52 -1.5
23,439 - GFF7158 0.52 -0.5
23,439 - GFF7158 0.52 -1.7
23,439 - GFF7158 0.52 -2.1
23,439 - GFF7158 0.52 +0.3
23,439 - GFF7158 0.52 +1.3
23,439 - GFF7158 0.52 -1.1
23,615 + GFF7158 0.73 +0.3
23,615 + GFF7158 0.73 -1.0
23,615 + GFF7158 0.73 -0.6
23,615 + GFF7158 0.73 -3.1
23,615 + GFF7158 0.73 -2.2
23,615 + GFF7158 0.73 -1.5
23,615 + GFF7158 0.73 -1.0
23,616 - GFF7158 0.73 -2.2
23,616 - GFF7158 0.73 -0.1
23,616 - GFF7158 0.73 +0.3
23,616 - GFF7158 0.73 -0.5
23,639 + GFF7158 0.76 -0.2
23,639 + GFF7158 0.76 -0.1
23,639 + GFF7158 0.76 +0.8
23,639 + GFF7158 0.76 -1.8
23,639 + GFF7158 0.76 +0.3
23,640 - GFF7158 0.76 -1.1
23,640 - GFF7158 0.76 -2.0
23,640 - GFF7158 0.76 +0.8
23,640 - GFF7158 0.76 +0.1
23,640 - GFF7158 0.76 -0.6
23,640 - GFF7158 0.76 -1.9
23,807 + -0.5
23,808 - +2.4
23,808 - -0.8
23,808 - -2.0
23,830 - +1.4
24,077 - GFF7159 0.40 +1.2
24,115 + GFF7159 0.46 -1.0
24,115 + GFF7159 0.46 -0.2
24,115 + GFF7159 0.46 -0.4
24,115 + GFF7159 0.46 -2.0
24,115 + GFF7159 0.46 +0.8
24,115 + GFF7159 0.46 +0.9
24,115 + GFF7159 0.46 -0.6
24,115 + GFF7159 0.46 +0.0
24,115 + GFF7159 0.46 +0.4
24,115 + GFF7159 0.46 +2.5
24,115 + GFF7159 0.46 +2.0
24,115 + GFF7159 0.46 +0.8
24,115 + GFF7159 0.46 +0.5
24,115 + GFF7159 0.46 -1.4
24,115 + GFF7159 0.46 +0.7
24,116 - GFF7159 0.46 -0.3
24,116 - GFF7159 0.46 -1.5
24,116 - GFF7159 0.46 +0.8
24,116 - GFF7159 0.46 -0.2
24,116 - GFF7159 0.46 -0.8
24,116 - GFF7159 0.46 -0.5
24,116 - GFF7159 0.46 -1.5
24,116 - GFF7159 0.46 -0.4
24,116 - GFF7159 0.46 -0.5
24,116 - GFF7159 0.46 -2.1
24,116 - GFF7159 0.46 -0.2
24,116 - GFF7159 0.46 +0.0
24,116 - GFF7159 0.46 -1.7
24,163 + GFF7159 0.54 +0.6
24,164 - GFF7159 0.54 -0.8
24,164 - GFF7159 0.54 -0.5
24,696 + GFF7160 0.57 +0.6
24,696 + GFF7160 0.57 -1.5

Or see this region's nucleotide sequence