Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF709 and GFF710 are separated by 90 nucleotides GFF710 and GFF711 overlap by 4 nucleotides GFF711 and GFF712 overlap by 4 nucleotides
GFF709 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 767,286 to 768,446
GFF709
GFF710 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 768,537 to 769,481
GFF710
GFF711 - KEGG: ribose transport system permease protein, at 769,478 to 770,443
GFF711
GFF712 - ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 770,440 to 771,990
GFF712
Position (kb) 768
769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 767.548 kb on + strand, within GFF709 at 767.548 kb on + strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.549 kb on - strand, within GFF709 at 767.582 kb on - strand, within GFF709 at 767.582 kb on - strand, within GFF709 at 767.677 kb on + strand, within GFF709 at 767.677 kb on + strand, within GFF709 at 767.678 kb on - strand, within GFF709 at 767.740 kb on + strand, within GFF709 at 767.888 kb on - strand, within GFF709 at 767.888 kb on - strand, within GFF709 at 768.101 kb on - strand, within GFF709 at 768.101 kb on - strand, within GFF709 at 768.211 kb on + strand, within GFF709 at 768.211 kb on + strand, within GFF709 at 768.211 kb on + strand, within GFF709 at 768.212 kb on - strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.229 kb on + strand, within GFF709 at 768.230 kb on - strand, within GFF709 at 768.230 kb on - strand, within GFF709 at 768.230 kb on - strand, within GFF709 at 768.526 kb on + strand at 768.527 kb on - strand at 768.527 kb on - strand at 768.655 kb on + strand, within GFF710 at 768.656 kb on - strand, within GFF710 at 768.656 kb on - strand, within GFF710 at 768.754 kb on + strand, within GFF710 at 768.754 kb on + strand, within GFF710 at 768.755 kb on - strand, within GFF710 at 769.039 kb on + strand, within GFF710 at 769.060 kb on + strand, within GFF710 at 769.061 kb on - strand, within GFF710 at 769.463 kb on + strand at 769.464 kb on - strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.509 kb on + strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.510 kb on - strand at 769.755 kb on + strand, within GFF711 at 769.755 kb on + strand, within GFF711 at 769.756 kb on - strand, within GFF711 at 769.756 kb on - strand, within GFF711 at 769.968 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.983 kb on + strand, within GFF711 at 769.984 kb on - strand, within GFF711 at 770.187 kb on + strand, within GFF711 at 770.187 kb on + strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.188 kb on - strand, within GFF711 at 770.370 kb on + strand at 770.370 kb on + strand at 770.370 kb on + strand at 770.370 kb on + strand at 770.371 kb on - strand at 770.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 767,548 + GFF709 0.23 -2.5 767,548 + GFF709 0.23 +0.1 767,549 - GFF709 0.23 +0.4 767,549 - GFF709 0.23 -0.9 767,549 - GFF709 0.23 +0.0 767,549 - GFF709 0.23 -2.3 767,582 - GFF709 0.25 -1.1 767,582 - GFF709 0.25 -1.3 767,677 + GFF709 0.34 -0.1 767,677 + GFF709 0.34 +0.4 767,678 - GFF709 0.34 -1.8 767,740 + GFF709 0.39 -1.3 767,888 - GFF709 0.52 +1.9 767,888 - GFF709 0.52 +2.4 768,101 - GFF709 0.70 +0.3 768,101 - GFF709 0.70 -0.4 768,211 + GFF709 0.80 +0.2 768,211 + GFF709 0.80 -1.0 768,211 + GFF709 0.80 -2.9 768,212 - GFF709 0.80 +0.7 768,229 + GFF709 0.81 -0.5 768,229 + GFF709 0.81 +1.1 768,229 + GFF709 0.81 -1.0 768,229 + GFF709 0.81 -1.5 768,230 - GFF709 0.81 -0.2 768,230 - GFF709 0.81 +0.6 768,230 - GFF709 0.81 -1.1 768,526 + -2.8 768,527 - -0.7 768,527 - -1.9 768,655 + GFF710 0.12 -2.2 768,656 - GFF710 0.13 -2.0 768,656 - GFF710 0.13 -2.2 768,754 + GFF710 0.23 +0.0 768,754 + GFF710 0.23 -2.9 768,755 - GFF710 0.23 -1.7 769,039 + GFF710 0.53 -0.3 769,060 + GFF710 0.55 -2.3 769,061 - GFF710 0.55 -0.3 769,463 + -1.3 769,464 - +0.1 769,509 + -2.9 769,509 + -3.4 769,509 + -2.5 769,509 + +0.9 769,509 + -2.8 769,510 - -0.7 769,510 - +0.1 769,510 - +1.2 769,510 - -0.8 769,510 - +2.1 769,510 - -1.3 769,755 + GFF711 0.29 -1.6 769,755 + GFF711 0.29 -0.7 769,756 - GFF711 0.29 -2.0 769,756 - GFF711 0.29 +0.5 769,968 + GFF711 0.51 -2.9 769,983 + GFF711 0.52 -0.9 769,983 + GFF711 0.52 -0.5 769,983 + GFF711 0.52 -2.5 769,984 - GFF711 0.52 +0.6 770,187 + GFF711 0.73 +0.3 770,187 + GFF711 0.73 -1.8 770,188 - GFF711 0.73 -3.2 770,188 - GFF711 0.73 +1.5 770,188 - GFF711 0.73 -2.1 770,370 + -0.3 770,370 + -0.9 770,370 + +1.5 770,370 + -2.1 770,371 - -1.1 770,371 - +0.6
Or see this region's nucleotide sequence