Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7019 and GFF7020 are separated by 150 nucleotides GFF7020 and GFF7021 overlap by 4 nucleotides
GFF7019 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 35,973 to 36,884
GFF7019
GFF7020 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 37,035 to 38,087
GFF7020
GFF7021 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 38,084 to 39,121
GFF7021
Position (kb) 37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 36.234 kb on + strand, within GFF7019 at 36.235 kb on - strand, within GFF7019 at 36.541 kb on - strand, within GFF7019 at 36.541 kb on - strand, within GFF7019 at 36.759 kb on + strand, within GFF7019 at 36.759 kb on + strand, within GFF7019 at 36.760 kb on - strand, within GFF7019 at 37.026 kb on + strand at 37.409 kb on - strand, within GFF7020 at 37.576 kb on + strand, within GFF7020 at 37.737 kb on + strand, within GFF7020 at 37.738 kb on - strand, within GFF7020 at 37.800 kb on + strand, within GFF7020 at 38.723 kb on + strand, within GFF7021 at 38.724 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.849 kb on + strand, within GFF7021 at 38.849 kb on + strand, within GFF7021 at 38.850 kb on - strand, within GFF7021
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 36,234 + GFF7019 0.29 -2.2 36,235 - GFF7019 0.29 +1.2 36,541 - GFF7019 0.62 -1.6 36,541 - GFF7019 0.62 -1.8 36,759 + GFF7019 0.86 -0.9 36,759 + GFF7019 0.86 -1.5 36,760 - GFF7019 0.86 +1.6 37,026 + +1.2 37,409 - GFF7020 0.36 +0.6 37,576 + GFF7020 0.51 +0.5 37,737 + GFF7020 0.67 +0.4 37,738 - GFF7020 0.67 +0.3 37,800 + GFF7020 0.73 +2.1 38,723 + GFF7021 0.62 +0.2 38,724 - GFF7021 0.62 -0.0 38,787 - GFF7021 0.68 +0.8 38,787 - GFF7021 0.68 +2.1 38,787 - GFF7021 0.68 -0.6 38,787 - GFF7021 0.68 -1.1 38,849 + GFF7021 0.74 -0.2 38,849 + GFF7021 0.74 -1.6 38,850 - GFF7021 0.74 -2.9
Or see this region's nucleotide sequence