Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6904 and GFF6905 are separated by 1 nucleotides GFF6905 and GFF6906 are separated by 5 nucleotides GFF6906 and GFF6907 are separated by 44 nucleotides
GFF6904 - Zinc-type alcohol dehydrogenase-like protein, at 39,002 to 40,012
GFF6904
GFF6905 - Chloride channel protein, at 40,014 to 41,783
GFF6905
GFF6906 - Transcriptional regulator, MarR family, at 41,789 to 42,214
GFF6906
GFF6907 - Acetyltransferase, GNAT family, at 42,259 to 42,867
GFF6907
Position (kb) 40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 39.017 kb on + strand at 39.018 kb on - strand at 39.020 kb on + strand at 39.020 kb on + strand at 39.020 kb on + strand at 39.020 kb on + strand at 39.021 kb on - strand at 39.021 kb on - strand at 39.021 kb on - strand at 39.263 kb on + strand, within GFF6904 at 39.264 kb on - strand, within GFF6904 at 39.264 kb on - strand, within GFF6904 at 39.266 kb on + strand, within GFF6904 at 39.266 kb on + strand, within GFF6904 at 39.266 kb on + strand, within GFF6904 at 39.267 kb on - strand, within GFF6904 at 39.267 kb on - strand, within GFF6904 at 39.267 kb on - strand, within GFF6904 at 39.267 kb on - strand, within GFF6904 at 39.267 kb on - strand, within GFF6904 at 39.398 kb on + strand, within GFF6904 at 39.398 kb on + strand, within GFF6904 at 39.398 kb on + strand, within GFF6904 at 39.399 kb on - strand, within GFF6904 at 39.399 kb on - strand, within GFF6904 at 39.689 kb on + strand, within GFF6904 at 39.689 kb on + strand, within GFF6904 at 40.010 kb on + strand at 40.010 kb on + strand at 40.010 kb on + strand at 40.010 kb on + strand at 40.011 kb on - strand at 40.011 kb on - strand at 40.011 kb on - strand at 40.011 kb on - strand at 40.015 kb on + strand at 40.016 kb on - strand at 40.016 kb on - strand at 40.016 kb on - strand at 40.222 kb on + strand, within GFF6905 at 40.222 kb on + strand, within GFF6905 at 40.223 kb on - strand, within GFF6905 at 40.223 kb on - strand, within GFF6905 at 40.369 kb on + strand, within GFF6905 at 40.369 kb on + strand, within GFF6905 at 40.369 kb on + strand, within GFF6905 at 40.472 kb on - strand, within GFF6905 at 40.480 kb on + strand, within GFF6905 at 40.480 kb on + strand, within GFF6905 at 40.480 kb on + strand, within GFF6905 at 40.481 kb on - strand, within GFF6905 at 40.481 kb on - strand, within GFF6905 at 40.481 kb on - strand, within GFF6905 at 40.552 kb on + strand, within GFF6905 at 40.883 kb on - strand, within GFF6905 at 40.883 kb on - strand, within GFF6905 at 40.927 kb on - strand, within GFF6905 at 40.999 kb on + strand, within GFF6905 at 40.999 kb on + strand, within GFF6905 at 40.999 kb on + strand, within GFF6905 at 41.000 kb on - strand, within GFF6905 at 41.000 kb on - strand, within GFF6905 at 41.000 kb on - strand, within GFF6905 at 41.579 kb on + strand, within GFF6905 at 41.580 kb on - strand, within GFF6905 at 42.084 kb on + strand, within GFF6906 at 42.084 kb on + strand, within GFF6906 at 42.084 kb on + strand, within GFF6906 at 42.085 kb on - strand, within GFF6906 at 42.085 kb on - strand, within GFF6906 at 42.262 kb on + strand at 42.262 kb on + strand at 42.262 kb on + strand at 42.263 kb on - strand at 42.263 kb on - strand at 42.263 kb on - strand at 42.264 kb on + strand at 42.264 kb on + strand at 42.398 kb on - strand, within GFF6907
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 39,017 + -0.5 39,018 - -1.3 39,020 + -3.3 39,020 + -1.1 39,020 + +0.7 39,020 + +1.3 39,021 - -0.3 39,021 - +0.3 39,021 - +0.4 39,263 + GFF6904 0.26 -0.4 39,264 - GFF6904 0.26 +0.5 39,264 - GFF6904 0.26 +0.3 39,266 + GFF6904 0.26 +0.8 39,266 + GFF6904 0.26 +1.2 39,266 + GFF6904 0.26 +0.2 39,267 - GFF6904 0.26 -1.6 39,267 - GFF6904 0.26 -0.3 39,267 - GFF6904 0.26 -0.2 39,267 - GFF6904 0.26 -0.4 39,267 - GFF6904 0.26 -0.1 39,398 + GFF6904 0.39 -0.8 39,398 + GFF6904 0.39 -0.2 39,398 + GFF6904 0.39 +1.4 39,399 - GFF6904 0.39 +0.2 39,399 - GFF6904 0.39 -1.1 39,689 + GFF6904 0.68 +0.8 39,689 + GFF6904 0.68 +0.2 40,010 + -0.2 40,010 + +2.0 40,010 + -0.4 40,010 + +0.7 40,011 - +0.3 40,011 - +1.2 40,011 - -0.6 40,011 - -0.0 40,015 + +0.6 40,016 - -1.2 40,016 - +1.3 40,016 - -1.0 40,222 + GFF6905 0.12 -1.7 40,222 + GFF6905 0.12 +1.2 40,223 - GFF6905 0.12 -0.1 40,223 - GFF6905 0.12 -0.9 40,369 + GFF6905 0.20 +0.9 40,369 + GFF6905 0.20 +0.3 40,369 + GFF6905 0.20 +1.1 40,472 - GFF6905 0.26 -0.3 40,480 + GFF6905 0.26 -1.9 40,480 + GFF6905 0.26 -3.3 40,480 + GFF6905 0.26 +0.3 40,481 - GFF6905 0.26 +0.8 40,481 - GFF6905 0.26 +0.3 40,481 - GFF6905 0.26 -3.5 40,552 + GFF6905 0.30 +0.4 40,883 - GFF6905 0.49 -0.3 40,883 - GFF6905 0.49 -0.8 40,927 - GFF6905 0.52 +1.5 40,999 + GFF6905 0.56 +1.0 40,999 + GFF6905 0.56 -1.6 40,999 + GFF6905 0.56 +0.1 41,000 - GFF6905 0.56 +1.2 41,000 - GFF6905 0.56 -2.4 41,000 - GFF6905 0.56 -1.1 41,579 + GFF6905 0.88 +2.2 41,580 - GFF6905 0.88 +1.2 42,084 + GFF6906 0.69 +0.2 42,084 + GFF6906 0.69 -2.4 42,084 + GFF6906 0.69 -1.0 42,085 - GFF6906 0.69 -0.6 42,085 - GFF6906 0.69 +2.2 42,262 + +2.8 42,262 + -0.8 42,262 + -1.0 42,263 - -0.1 42,263 - -2.0 42,263 - +2.5 42,264 + -0.2 42,264 + +0.3 42,398 - GFF6907 0.23 -0.6
Or see this region's nucleotide sequence