Strain Fitness in Variovorax sp. SCN45 around GFF6861

Experiment: Community=Locust bean gum; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6860 and GFF6861 overlap by 4 nucleotidesGFF6861 and GFF6862 are separated by 93 nucleotides GFF6860 - Epoxide hydrolase (EC 3.3.2.9), at 53,152 to 54,186 GFF6860 GFF6861 - no description, at 54,183 to 54,347 GFF6861 GFF6862 - Two-component system sensor histidine kinase, at 54,441 to 55,793 GFF6862 Position (kb) 54 55Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 53.220 kb on + strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.373 kb on - strand, within GFF6860at 53.381 kb on + strand, within GFF6860at 53.381 kb on + strand, within GFF6860at 53.381 kb on + strand, within GFF6860at 53.381 kb on + strand, within GFF6860at 53.382 kb on - strand, within GFF6860at 53.382 kb on - strand, within GFF6860at 53.393 kb on - strand, within GFF6860at 53.420 kb on + strand, within GFF6860at 53.420 kb on + strand, within GFF6860at 53.445 kb on - strand, within GFF6860at 53.445 kb on - strand, within GFF6860at 53.445 kb on - strand, within GFF6860at 53.496 kb on - strand, within GFF6860at 53.496 kb on - strand, within GFF6860at 53.588 kb on + strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.592 kb on - strand, within GFF6860at 53.592 kb on - strand, within GFF6860at 53.592 kb on - strand, within GFF6860at 53.597 kb on + strand, within GFF6860at 53.663 kb on + strand, within GFF6860at 53.663 kb on + strand, within GFF6860at 53.663 kb on + strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.744 kb on + strand, within GFF6860at 53.745 kb on - strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.951 kb on + strand, within GFF6860at 53.951 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 54.002 kb on + strand, within GFF6860at 54.003 kb on - strand, within GFF6860at 54.243 kb on + strand, within GFF6861at 54.243 kb on + strand, within GFF6861at 54.243 kb on + strand, within GFF6861at 54.243 kb on + strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.244 kb on - strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.276 kb on + strand, within GFF6861at 54.277 kb on - strand, within GFF6861at 54.277 kb on - strand, within GFF6861at 54.277 kb on - strand, within GFF6861at 54.277 kb on - strand, within GFF6861at 54.286 kb on + strand, within GFF6861at 54.286 kb on + strand, within GFF6861at 54.287 kb on - strand, within GFF6861at 54.287 kb on - strand, within GFF6861at 54.305 kb on - strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.314 kb on + strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.315 kb on - strand, within GFF6861at 54.354 kb on + strandat 54.354 kb on + strandat 54.355 kb on - strandat 54.355 kb on - strandat 54.383 kb on - strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.394 kb on + strandat 54.395 kb on - strandat 54.395 kb on - strandat 54.395 kb on - strandat 54.395 kb on - strandat 54.428 kb on + strandat 54.428 kb on + strandat 54.428 kb on + strandat 54.428 kb on + strandat 54.429 kb on - strandat 54.429 kb on - strandat 54.429 kb on - strandat 54.429 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.431 kb on - strandat 54.579 kb on + strand, within GFF6862at 54.714 kb on + strand, within GFF6862at 54.714 kb on + strand, within GFF6862at 54.715 kb on - strand, within GFF6862at 54.955 kb on + strand, within GFF6862at 54.955 kb on + strand, within GFF6862at 54.956 kb on - strand, within GFF6862at 54.988 kb on - strand, within GFF6862at 55.147 kb on - strand, within GFF6862at 55.147 kb on - strand, within GFF6862at 55.311 kb on + strand, within GFF6862at 55.311 kb on + strand, within GFF6862at 55.312 kb on - strand, within GFF6862at 55.312 kb on - strand, within GFF6862at 55.312 kb on - strand, within GFF6862at 55.312 kb on - strand, within GFF6862

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
remove
53,220 + +1.6
53,220 + +0.1
53,220 + -0.1
53,220 + -2.4
53,220 + -0.5
53,221 - -2.2
53,221 - +0.3
53,221 - -1.2
53,221 - +0.4
53,221 - -0.7
53,221 - -0.3
53,221 - -1.2
53,373 - GFF6860 0.21 +0.3
53,381 + GFF6860 0.22 -2.0
53,381 + GFF6860 0.22 -1.8
53,381 + GFF6860 0.22 +1.5
53,381 + GFF6860 0.22 -1.8
53,382 - GFF6860 0.22 -0.2
53,382 - GFF6860 0.22 -3.0
53,393 - GFF6860 0.23 -0.1
53,420 + GFF6860 0.26 +1.6
53,420 + GFF6860 0.26 -3.0
53,445 - GFF6860 0.28 +0.2
53,445 - GFF6860 0.28 +0.9
53,445 - GFF6860 0.28 -0.2
53,496 - GFF6860 0.33 +1.6
53,496 - GFF6860 0.33 +2.0
53,588 + GFF6860 0.42 -2.0
53,589 - GFF6860 0.42 -2.4
53,589 - GFF6860 0.42 -0.2
53,589 - GFF6860 0.42 +0.5
53,589 - GFF6860 0.42 +2.6
53,589 - GFF6860 0.42 -0.9
53,591 + GFF6860 0.42 -2.5
53,591 + GFF6860 0.42 -1.7
53,591 + GFF6860 0.42 -0.9
53,591 + GFF6860 0.42 +0.4
53,592 - GFF6860 0.43 -0.5
53,592 - GFF6860 0.43 -0.1
53,592 - GFF6860 0.43 -0.5
53,597 + GFF6860 0.43 +1.3
53,663 + GFF6860 0.49 +0.2
53,663 + GFF6860 0.49 +4.4
53,663 + GFF6860 0.49 +1.6
53,664 - GFF6860 0.49 +0.3
53,664 - GFF6860 0.49 -0.5
53,664 - GFF6860 0.49 +0.1
53,664 - GFF6860 0.49 -0.0
53,664 - GFF6860 0.49 -0.9
53,744 + GFF6860 0.57 +1.1
53,745 - GFF6860 0.57 -0.2
53,930 + GFF6860 0.75 +2.4
53,930 + GFF6860 0.75 -3.7
53,930 + GFF6860 0.75 -0.9
53,930 + GFF6860 0.75 +1.4
53,930 + GFF6860 0.75 +0.7
53,931 - GFF6860 0.75 -0.2
53,931 - GFF6860 0.75 +1.4
53,931 - GFF6860 0.75 -3.2
53,931 - GFF6860 0.75 -0.1
53,931 - GFF6860 0.75 +0.3
53,931 - GFF6860 0.75 -1.0
53,951 + GFF6860 0.77 -0.8
53,951 + GFF6860 0.77 -1.2
53,999 + GFF6860 0.82 +1.8
53,999 + GFF6860 0.82 +0.4
53,999 + GFF6860 0.82 -0.9
53,999 + GFF6860 0.82 -1.0
54,002 + GFF6860 0.82 -2.2
54,003 - GFF6860 0.82 -0.4
54,243 + GFF6861 0.36 -1.0
54,243 + GFF6861 0.36 -2.7
54,243 + GFF6861 0.36 -0.8
54,243 + GFF6861 0.36 -1.0
54,244 - GFF6861 0.37 +0.4
54,244 - GFF6861 0.37 -1.6
54,244 - GFF6861 0.37 -2.5
54,244 - GFF6861 0.37 +0.1
54,244 - GFF6861 0.37 -2.3
54,276 + GFF6861 0.56 -0.8
54,276 + GFF6861 0.56 -1.0
54,276 + GFF6861 0.56 -1.9
54,276 + GFF6861 0.56 -0.5
54,276 + GFF6861 0.56 -2.0
54,276 + GFF6861 0.56 +0.9
54,276 + GFF6861 0.56 +0.6
54,276 + GFF6861 0.56 -0.1
54,276 + GFF6861 0.56 -2.2
54,277 - GFF6861 0.57 -2.2
54,277 - GFF6861 0.57 -0.2
54,277 - GFF6861 0.57 +0.2
54,277 - GFF6861 0.57 -0.1
54,286 + GFF6861 0.62 -0.0
54,286 + GFF6861 0.62 -1.5
54,287 - GFF6861 0.63 -0.4
54,287 - GFF6861 0.63 +0.2
54,305 - GFF6861 0.74 +0.1
54,314 + GFF6861 0.79 -0.2
54,314 + GFF6861 0.79 +0.2
54,314 + GFF6861 0.79 -0.2
54,314 + GFF6861 0.79 -1.0
54,314 + GFF6861 0.79 -0.8
54,315 - GFF6861 0.80 +0.5
54,315 - GFF6861 0.80 -1.7
54,315 - GFF6861 0.80 +2.1
54,315 - GFF6861 0.80 +2.3
54,315 - GFF6861 0.80 -0.2
54,315 - GFF6861 0.80 -3.8
54,315 - GFF6861 0.80 -2.1
54,354 + +0.6
54,354 + -0.8
54,355 - -0.7
54,355 - -2.2
54,383 - -1.4
54,394 + -0.2
54,394 + +0.8
54,394 + -0.9
54,394 + -1.0
54,394 + +2.1
54,394 + +0.3
54,395 - -1.5
54,395 - -1.7
54,395 - +0.7
54,395 - -3.2
54,428 + -0.0
54,428 + -0.8
54,428 + -2.7
54,428 + +0.1
54,429 - +0.6
54,429 - -1.2
54,429 - +4.4
54,429 - +1.2
54,431 - -2.7
54,431 - -0.2
54,431 - -0.8
54,431 - -0.4
54,579 + GFF6862 0.10 -3.2
54,714 + GFF6862 0.20 -2.4
54,714 + GFF6862 0.20 +0.2
54,715 - GFF6862 0.20 -1.7
54,955 + GFF6862 0.38 -1.7
54,955 + GFF6862 0.38 +0.8
54,956 - GFF6862 0.38 +0.8
54,988 - GFF6862 0.40 -0.2
55,147 - GFF6862 0.52 -0.2
55,147 - GFF6862 0.52 -0.2
55,311 + GFF6862 0.64 -2.0
55,311 + GFF6862 0.64 -3.4
55,312 - GFF6862 0.64 -2.7
55,312 - GFF6862 0.64 +0.2
55,312 - GFF6862 0.64 -0.5
55,312 - GFF6862 0.64 -2.3

Or see this region's nucleotide sequence