Strain Fitness in Variovorax sp. SCN45 around GFF6844

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6841 and GFF6842 are separated by 18 nucleotidesGFF6842 and GFF6843 are separated by 8 nucleotidesGFF6843 and GFF6844 are separated by 29 nucleotidesGFF6844 and GFF6845 overlap by 4 nucleotidesGFF6845 and GFF6846 are separated by 10 nucleotides GFF6841 - hypothetical protein, at 24,990 to 25,487 GFF6841 GFF6842 - no description, at 25,506 to 25,760 GFF6842 GFF6843 - FIG00958542: hypothetical protein, at 25,769 to 26,329 GFF6843 GFF6844 - Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system, at 26,359 to 27,273 GFF6844 GFF6845 - ATPase involved in DNA repair, at 27,270 to 27,992 GFF6845 GFF6846 - Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, at 28,003 to 29,865 GFF6846 Position (kb) 26 27 28Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 25.464 kb on + strandat 25.869 kb on + strand, within GFF6843at 25.870 kb on - strand, within GFF6843at 25.870 kb on - strand, within GFF6843at 25.870 kb on - strand, within GFF6843at 25.870 kb on - strand, within GFF6843at 25.870 kb on - strand, within GFF6843at 25.935 kb on + strand, within GFF6843at 25.935 kb on + strand, within GFF6843at 25.936 kb on - strand, within GFF6843at 25.936 kb on - strand, within GFF6843at 26.103 kb on + strand, within GFF6843at 26.103 kb on + strand, within GFF6843at 26.104 kb on - strand, within GFF6843at 26.104 kb on - strand, within GFF6843at 26.438 kb on + strandat 26.439 kb on - strandat 26.807 kb on + strand, within GFF6844at 26.807 kb on + strand, within GFF6844at 26.808 kb on - strand, within GFF6844at 26.808 kb on - strand, within GFF6844at 26.808 kb on - strand, within GFF6844at 26.808 kb on - strand, within GFF6844at 26.808 kb on - strand, within GFF6844at 26.841 kb on + strand, within GFF6844at 26.843 kb on + strand, within GFF6844at 26.843 kb on + strand, within GFF6844at 26.843 kb on + strand, within GFF6844at 26.843 kb on + strand, within GFF6844at 26.844 kb on - strand, within GFF6844at 26.925 kb on + strand, within GFF6844at 26.926 kb on - strand, within GFF6844at 26.927 kb on + strand, within GFF6844at 26.927 kb on + strand, within GFF6844at 26.927 kb on + strand, within GFF6844at 26.927 kb on + strand, within GFF6844at 26.927 kb on + strand, within GFF6844at 26.927 kb on + strand, within GFF6844at 26.927 kb on + strand, within GFF6844at 26.927 kb on + strand, within GFF6844at 26.927 kb on + strand, within GFF6844at 26.928 kb on - strand, within GFF6844at 26.928 kb on - strand, within GFF6844at 26.928 kb on - strand, within GFF6844at 26.928 kb on - strand, within GFF6844at 26.928 kb on - strand, within GFF6844at 26.928 kb on - strand, within GFF6844at 26.928 kb on - strand, within GFF6844at 26.928 kb on - strand, within GFF6844at 26.928 kb on - strand, within GFF6844at 26.928 kb on - strand, within GFF6844at 26.928 kb on - strand, within GFF6844at 27.346 kb on + strand, within GFF6845at 27.347 kb on - strand, within GFF6845at 27.347 kb on - strand, within GFF6845at 27.347 kb on - strand, within GFF6845at 27.347 kb on - strand, within GFF6845at 27.362 kb on - strand, within GFF6845at 27.451 kb on + strand, within GFF6845at 27.451 kb on + strand, within GFF6845at 27.451 kb on + strand, within GFF6845at 27.451 kb on + strand, within GFF6845at 27.451 kb on + strand, within GFF6845at 27.451 kb on + strand, within GFF6845at 27.452 kb on - strand, within GFF6845at 27.481 kb on + strand, within GFF6845at 27.482 kb on - strand, within GFF6845at 27.482 kb on - strand, within GFF6845at 27.482 kb on - strand, within GFF6845at 27.598 kb on + strand, within GFF6845at 27.598 kb on + strand, within GFF6845at 27.599 kb on - strand, within GFF6845at 27.610 kb on + strand, within GFF6845at 28.004 kb on + strandat 28.005 kb on - strandat 28.005 kb on - strandat 28.058 kb on + strandat 28.058 kb on + strandat 28.115 kb on + strandat 28.115 kb on + strandat 28.178 kb on + strandat 28.179 kb on - strandat 28.179 kb on - strandat 28.179 kb on - strandat 28.215 kb on - strand, within GFF6846at 28.265 kb on + strand, within GFF6846at 28.265 kb on + strand, within GFF6846at 28.265 kb on + strand, within GFF6846at 28.265 kb on + strand, within GFF6846at 28.266 kb on - strand, within GFF6846at 28.266 kb on - strand, within GFF6846

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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25,464 + -0.1
25,869 + GFF6843 0.18 +0.2
25,870 - GFF6843 0.18 +0.3
25,870 - GFF6843 0.18 -1.2
25,870 - GFF6843 0.18 +1.4
25,870 - GFF6843 0.18 -0.4
25,870 - GFF6843 0.18 -1.3
25,935 + GFF6843 0.30 -0.8
25,935 + GFF6843 0.30 +0.1
25,936 - GFF6843 0.30 -1.9
25,936 - GFF6843 0.30 +0.2
26,103 + GFF6843 0.60 +0.2
26,103 + GFF6843 0.60 +1.3
26,104 - GFF6843 0.60 -1.4
26,104 - GFF6843 0.60 +1.5
26,438 + +0.2
26,439 - +0.1
26,807 + GFF6844 0.49 +2.8
26,807 + GFF6844 0.49 -0.2
26,808 - GFF6844 0.49 -0.7
26,808 - GFF6844 0.49 -2.9
26,808 - GFF6844 0.49 +2.1
26,808 - GFF6844 0.49 -2.8
26,808 - GFF6844 0.49 +0.3
26,841 + GFF6844 0.53 -0.5
26,843 + GFF6844 0.53 -0.9
26,843 + GFF6844 0.53 +2.3
26,843 + GFF6844 0.53 -2.1
26,843 + GFF6844 0.53 -0.8
26,844 - GFF6844 0.53 -0.4
26,925 + GFF6844 0.62 -0.2
26,926 - GFF6844 0.62 -0.8
26,927 + GFF6844 0.62 -0.1
26,927 + GFF6844 0.62 +0.1
26,927 + GFF6844 0.62 +0.2
26,927 + GFF6844 0.62 -0.1
26,927 + GFF6844 0.62 -0.8
26,927 + GFF6844 0.62 -2.2
26,927 + GFF6844 0.62 +0.1
26,927 + GFF6844 0.62 +1.1
26,927 + GFF6844 0.62 +1.7
26,928 - GFF6844 0.62 -1.0
26,928 - GFF6844 0.62 -1.1
26,928 - GFF6844 0.62 +0.4
26,928 - GFF6844 0.62 -3.1
26,928 - GFF6844 0.62 -0.8
26,928 - GFF6844 0.62 -0.8
26,928 - GFF6844 0.62 +0.7
26,928 - GFF6844 0.62 +1.1
26,928 - GFF6844 0.62 -2.5
26,928 - GFF6844 0.62 -3.0
26,928 - GFF6844 0.62 -1.4
27,346 + GFF6845 0.11 +0.2
27,347 - GFF6845 0.11 -0.5
27,347 - GFF6845 0.11 -2.3
27,347 - GFF6845 0.11 +2.1
27,347 - GFF6845 0.11 +0.0
27,362 - GFF6845 0.13 +0.7
27,451 + GFF6845 0.25 +0.8
27,451 + GFF6845 0.25 +0.5
27,451 + GFF6845 0.25 +1.7
27,451 + GFF6845 0.25 -1.8
27,451 + GFF6845 0.25 -2.2
27,451 + GFF6845 0.25 +0.6
27,452 - GFF6845 0.25 -1.1
27,481 + GFF6845 0.29 +0.2
27,482 - GFF6845 0.29 -1.2
27,482 - GFF6845 0.29 +1.8
27,482 - GFF6845 0.29 -0.4
27,598 + GFF6845 0.45 +0.7
27,598 + GFF6845 0.45 -0.7
27,599 - GFF6845 0.46 +1.2
27,610 + GFF6845 0.47 -1.5
28,004 + -2.1
28,005 - -2.5
28,005 - +0.8
28,058 + -1.1
28,058 + -0.2
28,115 + +1.4
28,115 + -1.0
28,178 + -0.7
28,179 - -0.0
28,179 - -1.7
28,179 - +1.4
28,215 - GFF6846 0.11 -0.9
28,265 + GFF6846 0.14 -1.8
28,265 + GFF6846 0.14 +0.4
28,265 + GFF6846 0.14 -1.5
28,265 + GFF6846 0.14 +1.9
28,266 - GFF6846 0.14 +0.5
28,266 - GFF6846 0.14 -4.0

Or see this region's nucleotide sequence